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2013 1
2014 1
2022 0
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IS-Dom: a dataset of independent structural domains automatically delineated from protein structures.
Ebina T, Umezawa Y, Kuroda Y. Ebina T, et al. J Comput Aided Mol Des. 2013 May;27(5):419-26. doi: 10.1007/s10822-013-9654-6. Epub 2013 May 29. J Comput Aided Mol Des. 2013. PMID: 23715893
The ISD detection protocol is fully automated, and all of the computed interactions are stored in the server which enables rapid update of IS-Dom. We also prepared a standard IS-Dom using parameters optimized by maximizing the Youden's index. ...Furthermore, our ISD …
The ISD detection protocol is fully automated, and all of the computed interactions are stored in the server which enables rapid update of I …
H-DROP: an SVM based helical domain linker predictor trained with features optimized by combining random forest and stepwise selection.
Ebina T, Suzuki R, Tsuji R, Kuroda Y. Ebina T, et al. J Comput Aided Mol Des. 2014 Aug;28(8):831-9. doi: 10.1007/s10822-014-9763-x. Epub 2014 Jun 26. J Comput Aided Mol Des. 2014. PMID: 24965847
This was made possible first because a large training dataset became available from IS-Dom, and second because we selected a small number of optimal features from a huge number of potential ones. The training helical linker dataset, which included 261 helical linkers, was …
This was made possible first because a large training dataset became available from IS-Dom, and second because we selected a small nu …