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The effect of replication initiation on gene amplification in the rDNA and its relationship to aging.
Ganley AR, Ide S, Saka K, Kobayashi T. Ganley AR, et al. Among authors: ide s. Mol Cell. 2009 Sep 11;35(5):683-93. doi: 10.1016/j.molcel.2009.07.012. Mol Cell. 2009. PMID: 19748361
Liquid-like behavior of chromatin.
Maeshima K, Ide S, Hibino K, Sasai M. Maeshima K, et al. Among authors: ide s. Curr Opin Genet Dev. 2016 Apr;37:36-45. doi: 10.1016/j.gde.2015.11.006. Epub 2016 Jan 27. Curr Opin Genet Dev. 2016. PMID: 26826680 Review.
Cellular senescence in yeast is regulated by rDNA noncoding transcription.
Saka K, Ide S, Ganley AR, Kobayashi T. Saka K, et al. Among authors: ide s. Curr Biol. 2013 Sep 23;23(18):1794-8. doi: 10.1016/j.cub.2013.07.048. Epub 2013 Aug 29. Curr Biol. 2013. PMID: 23993840
Rtt109 prevents hyper-amplification of ribosomal RNA genes through histone modification in budding yeast.
Ide S, Saka K, Kobayashi T. Ide S, et al. PLoS Genet. 2013 Apr;9(4):e1003410. doi: 10.1371/journal.pgen.1003410. Epub 2013 Apr 4. PLoS Genet. 2013. PMID: 23593017 Free PMC article.
Analysis of DNA replication in Saccharomyces cerevisiae by two-dimensional and pulsed-field gel electrophoresis.
Ide S, Kobayashi T. Ide S, et al. Curr Protoc Cell Biol. 2010 Dec;Chapter 22:Unit 22.14. doi: 10.1002/0471143030.cb2214s49. Curr Protoc Cell Biol. 2010. PMID: 21154549
Abundance of ribosomal RNA gene copies maintains genome integrity.
Ide S, Miyazaki T, Maki H, Kobayashi T. Ide S, et al. Science. 2010 Feb 5;327(5966):693-6. doi: 10.1126/science.1179044. Science. 2010. PMID: 20133573
A gene amplification system maintains large cluster(s) of tandemly repeated copies in the chromosome, with each species having a specific number of copies. ...
A gene amplification system maintains large cluster(s) of tandemly repeated copies in the chromosome, with each species having a spec …
Abnormality in initiation program of DNA replication is monitored by the highly repetitive rRNA gene array on chromosome XII in budding yeast.
Ide S, Watanabe K, Watanabe H, Shirahige K, Kobayashi T, Maki H. Ide S, et al. Mol Cell Biol. 2007 Jan;27(2):568-78. doi: 10.1128/MCB.00731-06. Epub 2006 Nov 13. Mol Cell Biol. 2007. PMID: 17101800 Free PMC article.
Density imaging of heterochromatin in live cells using orientation-independent-DIC microscopy.
Imai R, Nozaki T, Tani T, Kaizu K, Hibino K, Ide S, Tamura S, Takahashi K, Shribak M, Maeshima K. Imai R, et al. Among authors: ide s. Mol Biol Cell. 2017 Nov 7;28(23):3349-3359. doi: 10.1091/mbc.E17-06-0359. Epub 2017 Aug 23. Mol Biol Cell. 2017. PMID: 28835378 Free PMC article.
Dynamic chromatin organization without the 30-nm fiber.
Maeshima K, Ide S, Babokhov M. Maeshima K, et al. Among authors: ide s. Curr Opin Cell Biol. 2019 Jun;58:95-104. doi: 10.1016/j.ceb.2019.02.003. Epub 2019 Mar 22. Curr Opin Cell Biol. 2019. PMID: 30908980 Review.
A gene map of the human genome.
Schuler GD, Boguski MS, Stewart EA, Stein LD, Gyapay G, Rice K, White RE, Rodriguez-Tomé P, Aggarwal A, Bajorek E, Bentolila S, Birren BB, Butler A, Castle AB, Chiannilkulchai N, Chu A, Clee C, Cowles S, Day PJ, Dibling T, Drouot N, Dunham I, Duprat S, East C, Edwards C, Fan JB, Fang N, Fizames C, Garrett C, Green L, Hadley D, Harris M, Harrison P, Brady S, Hicks A, Holloway E, Hui L, Hussain S, Louis-Dit-Sully C, Ma J, MacGilvery A, Mader C, Maratukulam A, Matise TC, McKusick KB, Morissette J, Mungall A, Muselet D, Nusbaum HC, Page DC, Peck A, Perkins S, Piercy M, Qin F, Quackenbush J, Ranby S, Reif T, Rozen S, Sanders C, She X, Silva J, Slonim DK, Soderlund C, Sun WL, Tabar P, Thangarajah T, Vega-Czarny N, Vollrath D, Voyticky S, Wilmer T, Wu X, Adams MD, Auffray C, Walter NA, Brandon R, Dehejia A, Goodfellow PN, Houlgatte R, Hudson JR Jr, Ide SE, Iorio KR, Lee WY, Seki N, Nagase T, Ishikawa K, Nomura N, Phillips C, Polymeropoulos MH, Sandusky M, Schmitt K, Berry R, Swanson K, Torres R, Venter JC, Sikela JM, Beckmann JS, Weissenbach J, Myers RM, Cox DR, James MR, Bentley D, Deloukas P, Lander ES, Hudson TJ. Schuler GD, et al. Among authors: ide se. Science. 1996 Oct 25;274(5287):540-6. Science. 1996. PMID: 8849440 Review.
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