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Large-scale search for genes on which positive selection may operate.
Endo T, Ikeo K, Gojobori T. Endo T, et al. Among authors: ikeo k. Mol Biol Evol. 1996 May;13(5):685-90. doi: 10.1093/oxfordjournals.molbev.a025629. Mol Biol Evol. 1996. PMID: 8676743
VaProS: a database-integration approach for protein/genome information retrieval.
Gojobori T, Ikeo K, Katayama Y, Kawabata T, Kinjo AR, Kinoshita K, Kwon Y, Migita O, Mizutani H, Muraoka M, Nagata K, Omori S, Sugawara H, Yamada D, Yura K. Gojobori T, et al. Among authors: ikeo k. J Struct Funct Genomics. 2016 Dec;17(4):69-81. doi: 10.1007/s10969-016-9211-3. Epub 2016 Dec 23. J Struct Funct Genomics. 2016. PMID: 28012137 Free PMC article.
Biological databases at DNA Data Bank of Japan in the era of next-generation sequencing technologies.
Kodama Y, Kaminuma E, Saruhashi S, Ikeo K, Sugawara H, Tateno Y, Nakamura Y. Kodama Y, et al. Among authors: ikeo k. Adv Exp Med Biol. 2010;680:125-35. doi: 10.1007/978-1-4419-5913-3_15. Adv Exp Med Biol. 2010. PMID: 20865494
DDBJ dealing with mass data produced by the second generation sequencer.
Sugawara H, Ikeo K, Fukuchi S, Gojobori T, Tateno Y. Sugawara H, et al. Among authors: ikeo k. Nucleic Acids Res. 2009 Jan;37(Database issue):D16-8. doi: 10.1093/nar/gkn724. Epub 2008 Oct 16. Nucleic Acids Res. 2009. PMID: 18927114 Free PMC article.
An evolutionary origin and selection process of goldfish.
Komiyama T, Kobayashi H, Tateno Y, Inoko H, Gojobori T, Ikeo K. Komiyama T, et al. Among authors: ikeo k. Gene. 2009 Feb 1;430(1-2):5-11. doi: 10.1016/j.gene.2008.10.019. Epub 2008 Nov 6. Gene. 2009. PMID: 19027055
The evolutionary relationship between gene duplication and alternative splicing.
Jin L, Kryukov K, Clemente JC, Komiyama T, Suzuki Y, Imanishi T, Ikeo K, Gojobori T. Jin L, et al. Among authors: ikeo k. Gene. 2008 Dec 31;427(1-2):19-31. doi: 10.1016/j.gene.2008.09.002. Epub 2008 Sep 12. Gene. 2008. PMID: 18835337
The evolutionary origin of long-crowing chicken: its evolutionary relationship with fighting cocks disclosed by the mtDNA sequence analysis.
Komiyama T, Ikeo K, Gojobori T. Komiyama T, et al. Among authors: ikeo k. Gene. 2004 May 26;333:91-9. doi: 10.1016/j.gene.2004.02.035. Gene. 2004. PMID: 15177684
Estimation of ancestral gene set of bilaterian animals and its implication to dynamic change of gene content in bilaterian evolution.
Ogura A, Ikeo K, Gojobori T. Ogura A, et al. Among authors: ikeo k. Gene. 2005 Jan 17;345(1):65-71. doi: 10.1016/j.gene.2004.11.036. Epub 2005 Jan 5. Gene. 2005. PMID: 15716111
Evolutionary process of amino acid biosynthesis in Corynebacterium at the whole genome level.
Nishio Y, Nakamura Y, Usuda Y, Sugimoto S, Matsui K, Kawarabayasi Y, Kikuchi H, Gojobori T, Ikeo K. Nishio Y, et al. Among authors: ikeo k. Mol Biol Evol. 2004 Sep;21(9):1683-91. doi: 10.1093/molbev/msh175. Epub 2004 May 26. Mol Biol Evol. 2004. PMID: 15163767
Comparative analysis of gene expression for convergent evolution of camera eye between octopus and human.
Ogura A, Ikeo K, Gojobori T. Ogura A, et al. Among authors: ikeo k. Genome Res. 2004 Aug;14(8):1555-61. doi: 10.1101/gr.2268104. Genome Res. 2004. PMID: 15289475 Free PMC article.
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