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Phylogenetic analysis of a spontaneous cocoa bean fermentation metagenome reveals new insights into its bacterial and fungal community diversity.
Illeghems K, De Vuyst L, Papalexandratou Z, Weckx S. Illeghems K, et al. PLoS One. 2012;7(5):e38040. doi: 10.1371/journal.pone.0038040. Epub 2012 May 29. PLoS One. 2012. PMID: 22666442 Free PMC article.
Expression of the arginine deiminase pathway genes in Lactobacillus sakei is strain dependent and is affected by the environmental pH.
Rimaux T, Rivière A, Illeghems K, Weckx S, De Vuyst L, Leroy F. Rimaux T, et al. Among authors: illeghems k. Appl Environ Microbiol. 2012 Jul;78(14):4874-83. doi: 10.1128/AEM.07724-11. Epub 2012 Apr 27. Appl Environ Microbiol. 2012. PMID: 22544250 Free PMC article.
Applying meta-pathway analyses through metagenomics to identify the functional properties of the major bacterial communities of a single spontaneous cocoa bean fermentation process sample.
Illeghems K, Weckx S, De Vuyst L. Illeghems K, et al. Food Microbiol. 2015 Sep;50:54-63. doi: 10.1016/j.fm.2015.03.005. Epub 2015 Apr 2. Food Microbiol. 2015. PMID: 25998815
Characterization of the emerging zoonotic pathogen Arcobacter thereius by whole genome sequencing and comparative genomics.
Rovetto F, Carlier A, Van den Abeele AM, Illeghems K, Van Nieuwerburgh F, Cocolin L, Houf K. Rovetto F, et al. Among authors: illeghems k. PLoS One. 2017 Jul 3;12(7):e0180493. doi: 10.1371/journal.pone.0180493. eCollection 2017. PLoS One. 2017. PMID: 28671965 Free PMC article.
Whole-Genome Sequence Analysis of Bombella intestini LMG 28161T, a Novel Acetic Acid Bacterium Isolated from the Crop of a Red-Tailed Bumble Bee, Bombus lapidarius.
Li L, Illeghems K, Van Kerrebroeck S, Borremans W, Cleenwerck I, Smagghe G, De Vuyst L, Vandamme P. Li L, et al. Among authors: illeghems k. PLoS One. 2016 Nov 16;11(11):e0165611. doi: 10.1371/journal.pone.0165611. eCollection 2016. PLoS One. 2016. PMID: 27851750 Free PMC article.
Assessment of the contribution of cocoa-derived strains of Acetobacter ghanensis and Acetobacter senegalensis to the cocoa bean fermentation process through a genomic approach.
Illeghems K, Pelicaen R, De Vuyst L, Weckx S. Illeghems K, et al. Food Microbiol. 2016 Sep;58:68-78. doi: 10.1016/j.fm.2016.03.013. Epub 2016 Mar 29. Food Microbiol. 2016. PMID: 27217361
Comparative genome analysis of the candidate functional starter culture strains Lactobacillus fermentum 222 and Lactobacillus plantarum 80 for controlled cocoa bean fermentation processes.
Illeghems K, De Vuyst L, Weckx S. Illeghems K, et al. BMC Genomics. 2015 Oct 12;16:766. doi: 10.1186/s12864-015-1927-0. BMC Genomics. 2015. PMID: 26459565 Free PMC article.
Complete genome sequence and comparative analysis of Acetobacter pasteurianus 386B, a strain well-adapted to the cocoa bean fermentation ecosystem.
Illeghems K, De Vuyst L, Weckx S. Illeghems K, et al. BMC Genomics. 2013 Aug 1;14:526. doi: 10.1186/1471-2164-14-526. BMC Genomics. 2013. PMID: 23902333 Free PMC article.
Alternative antimicrobial compounds to control potential Lactobacillus contamination in bioethanol fermentations.
Limayem A, Hanning IB, Muthaiyan A, Illeghems K, Kim JW, Crandall PG, O'Bryan CA, Ricke SC. Limayem A, et al. Among authors: illeghems k. J Environ Sci Health B. 2011;46(8):709-14. doi: 10.1080/03601234.2011.594411. J Environ Sci Health B. 2011. PMID: 21879832
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