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Page 1
Investigation of protein functions through data-mining on integrated human transcriptome database, H-Invitational database (H-InvDB).
Yamasaki C, Koyanagi KO, Fujii Y, Itoh T, Barrero R, Tamura T, Yamaguchi-Kabata Y, Tanino M, Takeda J, Fukuchi S, Miyazaki S, Nomura N, Sugano S, Imanishi T, Gojobori T. Yamasaki C, et al. Among authors: imanishi t. Gene. 2005 Dec 30;364:99-107. doi: 10.1016/j.gene.2005.05.036. Epub 2005 Sep 26. Gene. 2005. PMID: 16185827
TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB.
Yamasaki C, Kawashima H, Todokoro F, Imamizu Y, Ogawa M, Tanino M, Itoh T, Gojobori T, Imanishi T. Yamasaki C, et al. Among authors: imanishi t. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W345-9. doi: 10.1093/nar/gkl283. Nucleic Acids Res. 2006. PMID: 16845023 Free PMC article.
Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56,419 completely sequenced and manually annotated full-length cDNAs.
Takeda J, Suzuki Y, Nakao M, Barrero RA, Koyanagi KO, Jin L, Motono C, Hata H, Isogai T, Nagai K, Otsuki T, Kuryshev V, Shionyu M, Yura K, Go M, Thierry-Mieg J, Thierry-Mieg D, Wiemann S, Nomura N, Sugano S, Gojobori T, Imanishi T. Takeda J, et al. Among authors: imanishi t. Nucleic Acids Res. 2006;34(14):3917-28. doi: 10.1093/nar/gkl507. Epub 2006 Aug 12. Nucleic Acids Res. 2006. PMID: 16914452 Free PMC article.
Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees.
Matsuya A, Sakate R, Kawahara Y, Koyanagi KO, Sato Y, Fujii Y, Yamasaki C, Habara T, Nakaoka H, Todokoro F, Yamaguchi K, Endo T, Oota S, Makalowski W, Ikeo K, Suzuki Y, Hanada K, Hashimoto K, Hirai M, Iwama H, Saitou N, Hiraki AT, Jin L, Kaneko Y, Kanno M, Murakami K, Noda AO, Saichi N, Sanbonmatsu R, Suzuki M, Takeda J, Tanaka M, Gojobori T, Imanishi T, Itoh T. Matsuya A, et al. Among authors: imanishi t. Nucleic Acids Res. 2008 Jan;36(Database issue):D787-92. doi: 10.1093/nar/gkm878. Epub 2007 Nov 3. Nucleic Acids Res. 2008. PMID: 17982176 Free PMC article.
The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts.
Genome Information Integration Project And H-Invitational 2; Yamasaki C, Murakami K, Fujii Y, Sato Y, Harada E, Takeda J, Taniya T, Sakate R, Kikugawa S, Shimada M, Tanino M, Koyanagi KO, Barrero RA, Gough C, Chun HW, Habara T, Hanaoka H, Hayakawa Y, Hilton PB, Kaneko Y, Kanno M, Kawahara Y, Kawamura T, Matsuya A, Nagata N, Nishikata K, Noda AO, Nurimoto S, Saichi N, Sakai H, Sanbonmatsu R, Shiba R, Suzuki M, Takabayashi K, Takahashi A, Tamura T, Tanaka M, Tanaka S, Todokoro F, Yamaguchi K, Yamamoto N, Okido T, Mashima J, Hashizume A, Jin L, Lee KB, Lin YC, Nozaki A, Sakai K, Tada M, Miyazaki S, Makino T, Ohyanagi H, Osato N, Tanaka N, Suzuki Y, Ikeo K, Saitou N, Sugawara H, O'Donovan C, Kulikova T, Whitfield E, Halligan B, Shimoyama M, Twigger S, Yura K, Kimura K, Yasuda T, Nishikawa T, Akiyama Y, Motono C, Mukai Y, Nagasaki H, Suwa M, Horton P, Kikuno R, Ohara O, Lancet D, Eveno E, Graudens E, Imbeaud S, Debily MA, Hayashizaki Y, Amid C, Han M, Osanger A, Endo T, Thomas MA, Hirakawa M, Makalowski W, Nakao M, Kim NS, Yoo HS, De Souza SJ, Bonaldo Mde F, Niimura Y, Kuryshev V, Schupp I, Wiemann S, Bellgard M, Shionyu M, Jia L, Thierry-Mieg D, Thierry-Mieg J, Wagner L, Zhang Q, Go M… See abstract for full author list ➔ Genome Information Integration Project And H-Invitational 2, et al. Among authors: imanishi t. Nucleic Acids Res. 2008 Jan;36(Database issue):D793-9. doi: 10.1093/nar/gkm999. Epub 2007 Dec 18. Nucleic Acids Res. 2008. PMID: 18089548 Free PMC article.
Low conservation and species-specific evolution of alternative splicing in humans and mice: comparative genomics analysis using well-annotated full-length cDNAs.
Takeda J, Suzuki Y, Sakate R, Sato Y, Seki M, Irie T, Takeuchi N, Ueda T, Nakao M, Sugano S, Gojobori T, Imanishi T. Takeda J, et al. Among authors: imanishi t. Nucleic Acids Res. 2008 Nov;36(20):6386-95. doi: 10.1093/nar/gkn677. Epub 2008 Oct 5. Nucleic Acids Res. 2008. PMID: 18838389 Free PMC article.
VarySysDB: a human genetic polymorphism database based on all H-InvDB transcripts.
Shimada MK, Matsumoto R, Hayakawa Y, Sanbonmatsu R, Gough C, Yamaguchi-Kabata Y, Yamasaki C, Imanishi T, Gojobori T. Shimada MK, et al. Among authors: imanishi t. Nucleic Acids Res. 2009 Jan;37(Database issue):D810-5. doi: 10.1093/nar/gkn798. Epub 2008 Oct 25. Nucleic Acids Res. 2009. PMID: 18953038 Free PMC article.
H-DBAS: human-transcriptome database for alternative splicing: update 2010.
Takeda J, Suzuki Y, Sakate R, Sato Y, Gojobori T, Imanishi T, Sugano S. Takeda J, et al. Among authors: imanishi t. Nucleic Acids Res. 2010 Jan;38(Database issue):D86-90. doi: 10.1093/nar/gkp984. Epub 2009 Dec 7. Nucleic Acids Res. 2010. PMID: 19969536 Free PMC article.
656 results