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Interaction network containing conserved and essential protein complexes in Escherichia coli.
Butland G, Peregrín-Alvarez JM, Li J, Yang W, Yang X, Canadien V, Starostine A, Richards D, Beattie B, Krogan N, Davey M, Parkinson J, Greenblatt J, Emili A. Butland G, et al. Nature. 2005 Feb 3;433(7025):531-7. doi: 10.1038/nature03239. Nature. 2005. PMID: 15690043
Proteins often function as components of multi-subunit complexes. Despite its long history as a model organism, no large-scale analysis of protein complexes in Escherichia coli has yet been reported. ...An interaction network
Proteins often function as components of multi-subunit complexes. Despite its long history as a model organism, no large-scale
Iteration method for predicting essential proteins based on orthology and protein-protein interaction networks.
Peng W, Wang J, Wang W, Liu Q, Wu FX, Pan Y. Peng W, et al. BMC Syst Biol. 2012 Jul 18;6:87. doi: 10.1186/1752-0509-6-87. BMC Syst Biol. 2012. PMID: 22808943 Free PMC article.
Many computational methods have been proposed for predicting essential proteins by using the topological features of protein-protein interaction (PPI) networks. ...However, none of their methods has widely been acknowledged. RESULTS: By c …
Many computational methods have been proposed for predicting essential proteins by using the topological features of protei
Refinement of the subunit interaction network within the nucleosome remodelling and deacetylase (NuRD) complex.
Torrado M, Low JKK, Silva APG, Schmidberger JW, Sana M, Sharifi Tabar M, Isilak ME, Winning CS, Kwong C, Bedward MJ, Sperlazza MJ, Williams DC Jr, Shepherd NE, Mackay JP. Torrado M, et al. FEBS J. 2017 Dec;284(24):4216-4232. doi: 10.1111/febs.14301. Epub 2017 Nov 13. FEBS J. 2017. PMID: 29063705 Free PMC article.
The complex comprises at least six proteins with two or more paralogues of each protein routinely identified when the complex is purified from cell extracts. ...First, the expression of many NuRD subunits in bacteria is unlikely to lead to folded, acti …
The complex comprises at least six proteins with two or more paralogues of each protein routinely identified when the …
The topology of the bacterial co-conserved protein network and its implications for predicting protein function.
Karimpour-Fard A, Leach SM, Hunter LE, Gill RT. Karimpour-Fard A, et al. BMC Genomics. 2008 Jun 30;9:313. doi: 10.1186/1471-2164-9-313. BMC Genomics. 2008. PMID: 18590549 Free PMC article.
BACKGROUND: Protein-protein interactions networks are most often generated from physical protein-protein interaction data. ...Since the topology of bacteria co-conservation protein-protein interaction
BACKGROUND: Protein-protein interactions networks are most often generated from physical protein-prote
Characterization of the Deep-Sea Streptomyces sp. SCSIO 02999 Derived VapC/VapB Toxin-Antitoxin System in Escherichia coli.
Guo Y, Yao J, Sun C, Wen Z, Wang X. Guo Y, et al. Toxins (Basel). 2016 Jul 1;8(7):195. doi: 10.3390/toxins8070195. Toxins (Basel). 2016. PMID: 27376329 Free PMC article.
Overproduction of VapC strongly inhibited cell growth and resulted in a bleb-containing morphology in E. coli. The toxicity of VapC was neutralized through direct protein-protein interaction by a small protein antitoxin VapB encoded by a …
Overproduction of VapC strongly inhibited cell growth and resulted in a bleb-containing morphology in E. coli. The toxicity of …
The activity and specificity of the outer membrane protein chaperone SurA are modulated by a proline isomerase domain.
Ricci DP, Schwalm J, Gonzales-Cope M, Silhavy TJ. Ricci DP, et al. mBio. 2013 Aug 13;4(4):e00540-13. doi: 10.1128/mBio.00540-13. mBio. 2013. PMID: 23943764 Free PMC article.
SurA is a component of the periplasmic chaperone network that plays a central role in biogenesis of integral outer membrane beta-barrel proteins (OMPs) in Escherichia coli. ...These mutations apparently bypass the requirement for a stable interactio
SurA is a component of the periplasmic chaperone network that plays a central role in biogenesis of integral outer membrane beta-barr …
Crystal structures of E. coli CcmG and its mutants reveal key roles of the N-terminal beta-sheet and the fingerprint region.
Ouyang N, Gao YG, Hu HY, Xia ZX. Ouyang N, et al. Proteins. 2006 Dec 1;65(4):1021-31. doi: 10.1002/prot.21184. Proteins. 2006. PMID: 17019698
Here we report the crystal structures of Escherichia coli CcmG and its two mutants, P144A and the N-terminal fifty seven-residue deletion mutant, and two additional deletion mutants were studied by circular dichroism. ...Structural comparison of E. coli CcmG …
Here we report the crystal structures of Escherichia coli CcmG and its two mutants, P144A and the N-terminal fifty seven-resid …
Hybrid Fo complexes of the ATP synthases of spinach chloroplasts and Escherichia coli. Immunoprecipitation and mutant analyses.
Burkovski A, Deckers-Hebestreit G, Altendorf K. Burkovski A, et al. Eur J Biochem. 1994 Nov 1;225(3):1221-8. doi: 10.1111/j.1432-1033.1994.1221b.x. Eur J Biochem. 1994. PMID: 7957212 Free article.
Hybrid Fo complexes of the ATP synthases of spinach chloroplast (CFo) and Escherichia coli (EFo) were investigated. ...The results suggested that a network of interactions between the subunits essential for proton translocation and/or cou …
Hybrid Fo complexes of the ATP synthases of spinach chloroplast (CFo) and Escherichia coli (EFo) were investigated. ... …
The polar warhead of a TRIM24 bromodomain inhibitor rearranges a water-mediated interaction network.
Liu J, Li F, Bao H, Jiang Y, Zhang S, Ma R, Gao J, Wu J, Ruan K. Liu J, et al. FEBS J. 2017 Apr;284(7):1082-1095. doi: 10.1111/febs.14041. Epub 2017 Mar 16. FEBS J. 2017. PMID: 28207202 Free article.
Tripartite motif-containing protein 24 (TRIM24) is closely correlated with multiple cancers, and a recent study demonstrated that the bromodomain of TRIM24 is essential for the proliferation of lethal castration-resistant prostate cancer. Here, we identify th …
Tripartite motif-containing protein 24 (TRIM24) is closely correlated with multiple cancers, and a recent study demonstrated t …