Irizarry RA - Search Results

1

affy--analysis of Affymetrix GeneChip data at the probe level.

Gautier L, Cope L, Bolstad BM, Irizarry RA. Gautier L, et al. Among authors: irizarry ra. Bioinformatics. 2004 Feb 12;20(3):307-15. doi: 10.1093/bioinformatics/btg405. Bioinformatics. 2004. PMID: 14960456

2

Assessing affymetrix GeneChip microarray quality.

McCall MN, Murakami PN, Lukk M, Huber W, Irizarry RA. McCall MN, et al. Among authors: irizarry ra. BMC Bioinformatics. 2011 May 7;12:137. doi: 10.1186/1471-2105-12-137. BMC Bioinformatics. 2011. PMID: 21548974 Free PMC article.

3

A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database.

Katz S, Irizarry RA, Lin X, Tripputi M, Porter MW. Katz S, et al. Among authors: irizarry ra. BMC Bioinformatics. 2006 Oct 23;7:464. doi: 10.1186/1471-2105-7-464. BMC Bioinformatics. 2006. PMID: 17059591 Free PMC article.

4

Feature-level exploration of a published Affymetrix GeneChip control dataset.

Irizarry RA, Cope LM, Wu Z. Irizarry RA, et al. Genome Biol. 2006;7(8):404. doi: 10.1186/gb-2006-7-8-404. Genome Biol. 2006. PMID: 16953902 Free PMC article.

5

Comparison of Affymetrix GeneChip expression measures.

Irizarry RA, Wu Z, Jaffee HA. Irizarry RA, et al. Bioinformatics. 2006 Apr 1;22(7):789-94. doi: 10.1093/bioinformatics/btk046. Epub 2006 Jan 12. Bioinformatics. 2006. PMID: 16410320

6

A framework for oligonucleotide microarray preprocessing.

Carvalho BS, Irizarry RA. Carvalho BS, et al. Among authors: irizarry ra. Bioinformatics. 2010 Oct 1;26(19):2363-7. doi: 10.1093/bioinformatics/btq431. Epub 2010 Aug 5. Bioinformatics. 2010. PMID: 20688976 Free PMC article.

7

Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data.

Carvalho B, Bengtsson H, Speed TP, Irizarry RA. Carvalho B, et al. Among authors: irizarry ra. Biostatistics. 2007 Apr;8(2):485-99. doi: 10.1093/biostatistics/kxl042. Epub 2006 Dec 22. Biostatistics. 2007. PMID: 17189563

8

Thawing Frozen Robust Multi-array Analysis (fRMA).

McCall MN, Irizarry RA. McCall MN, et al. Among authors: irizarry ra. BMC Bioinformatics. 2011 Sep 16;12:369. doi: 10.1186/1471-2105-12-369. BMC Bioinformatics. 2011. PMID: 21923903 Free PMC article.

9

Performance assessment of copy number microarray platforms using a spike-in experiment.

Halper-Stromberg E, Frelin L, Ruczinski I, Scharpf R, Jie C, Carvalho B, Hao H, Hetrick K, Jedlicka A, Dziedzic A, Doheny K, Scott AF, Baylin S, Pevsner J, Spencer F, Irizarry RA. Halper-Stromberg E, et al. Among authors: irizarry ra. Bioinformatics. 2011 Apr 15;27(8):1052-60. doi: 10.1093/bioinformatics/btr106. Bioinformatics. 2011. PMID: 21478196 Free PMC article.

10

R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips.

Ritchie ME, Carvalho BS, Hetrick KN, Tavaré S, Irizarry RA. Ritchie ME, et al. Among authors: irizarry ra. Bioinformatics. 2009 Oct 1;25(19):2621-3. doi: 10.1093/bioinformatics/btp470. Epub 2009 Aug 6. Bioinformatics. 2009. PMID: 19661241 Free PMC article.

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