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Assessing affymetrix GeneChip microarray quality.
McCall MN, Murakami PN, Lukk M, Huber W, Irizarry RA. McCall MN, et al. Among authors: irizarry ra. BMC Bioinformatics. 2011 May 7;12:137. doi: 10.1186/1471-2105-12-137. BMC Bioinformatics. 2011. PMID: 21548974 Free PMC article.
Comparison of Affymetrix GeneChip expression measures.
Irizarry RA, Wu Z, Jaffee HA. Irizarry RA, et al. Bioinformatics. 2006 Apr 1;22(7):789-94. doi: 10.1093/bioinformatics/btk046. Epub 2006 Jan 12. Bioinformatics. 2006. PMID: 16410320
A framework for oligonucleotide microarray preprocessing.
Carvalho BS, Irizarry RA. Carvalho BS, et al. Among authors: irizarry ra. Bioinformatics. 2010 Oct 1;26(19):2363-7. doi: 10.1093/bioinformatics/btq431. Epub 2010 Aug 5. Bioinformatics. 2010. PMID: 20688976 Free PMC article.
Thawing Frozen Robust Multi-array Analysis (fRMA).
McCall MN, Irizarry RA. McCall MN, et al. Among authors: irizarry ra. BMC Bioinformatics. 2011 Sep 16;12:369. doi: 10.1186/1471-2105-12-369. BMC Bioinformatics. 2011. PMID: 21923903 Free PMC article.
Performance assessment of copy number microarray platforms using a spike-in experiment.
Halper-Stromberg E, Frelin L, Ruczinski I, Scharpf R, Jie C, Carvalho B, Hao H, Hetrick K, Jedlicka A, Dziedzic A, Doheny K, Scott AF, Baylin S, Pevsner J, Spencer F, Irizarry RA. Halper-Stromberg E, et al. Among authors: irizarry ra. Bioinformatics. 2011 Apr 15;27(8):1052-60. doi: 10.1093/bioinformatics/btr106. Bioinformatics. 2011. PMID: 21478196 Free PMC article.
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