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Reaction-diffusion master equation, diffusion-limited reactions, and singular potentials.
Isaacson SA, Isaacson D. Isaacson SA, et al. Among authors: isaacson d. Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Dec;80(6 Pt 2):066106. doi: 10.1103/PhysRevE.80.066106. Epub 2009 Dec 7. Phys Rev E Stat Nonlin Soft Matter Phys. 2009. PMID: 20365230 Free PMC article.
Isaacson, SIAM J. Appl. Math. 70, 77 (2009)]. The approximation was shown to be divergent in the limit that the lattice spacing in the RDME approached zero. ...
Isaacson, SIAM J. Appl. Math. 70, 77 (2009)]. The approximation was shown to be divergent in the limit that the lattice spacing in th
The influence of volume exclusion by chromatin on the time required to find specific DNA binding sites by diffusion.
Isaacson SA, McQueen DM, Peskin CS. Isaacson SA, et al. Proc Natl Acad Sci U S A. 2011 Mar 1;108(9):3815-20. doi: 10.1073/pnas.1018821108. Epub 2011 Feb 7. Proc Natl Acad Sci U S A. 2011. PMID: 21300894 Free PMC article.
A comparison of bimolecular reaction models for stochastic reaction-diffusion systems.
Agbanusi IC, Isaacson SA. Agbanusi IC, et al. Among authors: isaacson sa. Bull Math Biol. 2014 Apr;76(4):922-46. doi: 10.1007/s11538-013-9833-6. Epub 2013 Apr 12. Bull Math Biol. 2014. PMID: 23579988
A convergent reaction-diffusion master equation.
Isaacson SA. Isaacson SA. J Chem Phys. 2013 Aug 7;139(5):054101. doi: 10.1063/1.4816377. J Chem Phys. 2013. PMID: 23927237
Uniform asymptotic approximation of diffusion to a small target.
Isaacson SA, Newby J. Isaacson SA, et al. Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Jul;88(1):012820. doi: 10.1103/PhysRevE.88.012820. Epub 2013 Jul 31. Phys Rev E Stat Nonlin Soft Matter Phys. 2013. PMID: 23944531
The influence of spatial variation in chromatin density determined by X-ray tomograms on the time to find DNA binding sites.
Isaacson SA, Larabell CA, Le Gros MA, McQueen DM, Peskin CS. Isaacson SA, et al. Bull Math Biol. 2013 Nov;75(11):2093-117. doi: 10.1007/s11538-013-9883-9. Epub 2013 Aug 17. Bull Math Biol. 2013. PMID: 23955281 Free PMC article.
Uniform asymptotic approximation of diffusion to a small target: Generalized reaction models.
Isaacson SA, Mauro AJ, Newby J. Isaacson SA, et al. Phys Rev E. 2016 Oct;94(4-1):042414. doi: 10.1103/PhysRevE.94.042414. Epub 2016 Oct 18. Phys Rev E. 2016. PMID: 27841549
The Influence of Molecular Reach and Diffusivity on the Efficacy of Membrane-Confined Reactions.
Zhang Y, Clemens L, Goyette J, Allard J, Dushek O, Isaacson SA. Zhang Y, et al. Among authors: isaacson sa. Biophys J. 2019 Oct 1;117(7):1189-1201. doi: 10.1016/j.bpj.2019.08.023. Epub 2019 Aug 28. Biophys J. 2019. PMID: 31543263 Free PMC article.
Imaging and characterizing cells using tomography.
Do M, Isaacson SA, McDermott G, Le Gros MA, Larabell CA. Do M, et al. Among authors: isaacson sa. Arch Biochem Biophys. 2015 Sep 1;581:111-21. doi: 10.1016/j.abb.2015.01.011. Epub 2015 Jan 17. Arch Biochem Biophys. 2015. PMID: 25602704 Free PMC article. Review.
Biophysical assay for tethered signaling reactions reveals tether-controlled activity for the phosphatase SHP-1.
Goyette J, Salas CS, Coker-Gordon N, Bridge M, Isaacson SA, Allard J, Dushek O. Goyette J, et al. Among authors: isaacson sa. Sci Adv. 2017 Mar 24;3(3):e1601692. doi: 10.1126/sciadv.1601692. eCollection 2017 Mar. Sci Adv. 2017. PMID: 28378014 Free PMC article.
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