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Exact correspondence between walk in nucleotide and protein sequence spaces.

Ivankov DN. Ivankov DN. PLoS One. 2017 Aug 11;12(8):e0182525. doi: 10.1371/journal.pone.0182525. eCollection 2017. PLoS One. 2017. PMID: 28800638 Free PMC article.

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Folding nuclei in proteins.

Galzitskaya OV, Ivankov DN, Finkelstein AV. Galzitskaya OV, et al. Among authors: ivankov dn. FEBS Lett. 2001 Feb 2;489(2-3):113-8. doi: 10.1016/s0014-5793(01)02092-0. FEBS Lett. 2001. PMID: 11165233 Review.

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Prediction of protein folding rates from the amino acid sequence-predicted secondary structure.

Ivankov DN, Finkelstein AV. Ivankov DN, et al. Proc Natl Acad Sci U S A. 2004 Jun 15;101(24):8942-4. doi: 10.1073/pnas.0402659101. Epub 2004 Jun 7. Proc Natl Acad Sci U S A. 2004. PMID: 15184682 Free PMC article.

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More compact protein globules exhibit slower folding rates.

Galzitskaya OV, Reifsnyder DC, Bogatyreva NS, Ivankov DN, Garbuzynskiy SO. Galzitskaya OV, et al. Among authors: ivankov dn. Proteins. 2008 Feb 1;70(2):329-32. doi: 10.1002/prot.21619. Proteins. 2008. PMID: 17876831

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Compactness determines protein folding type.

Galzitskaya OV, Bogatyreva NS, Ivankov DN. Galzitskaya OV, et al. Among authors: ivankov dn. J Bioinform Comput Biol. 2008 Aug;6(4):667-80. doi: 10.1142/s0219720008003618. J Bioinform Comput Biol. 2008. PMID: 18763735

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Coupling between properties of the protein shape and the rate of protein folding.

Ivankov DN, Bogatyreva NS, Lobanov MY, Galzitskaya OV. Ivankov DN, et al. PLoS One. 2009 Aug 3;4(8):e6476. doi: 10.1371/journal.pone.0006476. PLoS One. 2009. PMID: 19649298 Free PMC article.

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Rate of sequence divergence under constant selection.

Kondrashov AS, Povolotskaya IS, Ivankov DN, Kondrashov FA. Kondrashov AS, et al. Among authors: ivankov dn. Biol Direct. 2010 Jan 21;5:5. doi: 10.1186/1745-6150-5-5. Biol Direct. 2010. PMID: 20092641 Free PMC article.

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Protein folding as flow across a network of folding-unfolding pathways. 1. The mid-transition case.

Ivankov DN, Finkelstein AV. Ivankov DN, et al. J Phys Chem B. 2010 Jun 17;114(23):7920-9. doi: 10.1021/jp912186z. J Phys Chem B. 2010. PMID: 20443590

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Protein folding as flow across a network of folding-unfolding pathways. 2. The "in-water" case.

Ivankov DN, Finkelstein AV. Ivankov DN, et al. J Phys Chem B. 2010 Jun 17;114(23):7930-4. doi: 10.1021/jp912187w. J Phys Chem B. 2010. PMID: 20496917

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A structural perspective of compensatory evolution.

Ivankov DN, Finkelstein AV, Kondrashov FA. Ivankov DN, et al. Curr Opin Struct Biol. 2014 Jun;26(100):104-12. doi: 10.1016/j.sbi.2014.05.004. Epub 2014 Jun 28. Curr Opin Struct Biol. 2014. PMID: 24981969 Free PMC article. Review.

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