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Genomics and array technology.
DeRisi JL, Iyer VR. DeRisi JL, et al. Curr Opin Oncol. 1999 Jan;11(1):76-9. doi: 10.1097/00001622-199901000-00015. Curr Opin Oncol. 1999. PMID: 9914882 Review.
Systematic variation in gene expression patterns in human cancer cell lines.
Ross DT, Scherf U, Eisen MB, Perou CM, Rees C, Spellman P, Iyer V, Jeffrey SS, Van de Rijn M, Waltham M, Pergamenschikov A, Lee JC, Lashkari D, Shalon D, Myers TG, Weinstein JN, Botstein D, Brown PO. Ross DT, et al. Nat Genet. 2000 Mar;24(3):227-35. doi: 10.1038/73432. Nat Genet. 2000. PMID: 10700174
Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF.
Iyer VR, Horak CE, Scafe CS, Botstein D, Snyder M, Brown PO. Iyer VR, et al. Nature. 2001 Jan 25;409(6819):533-8. doi: 10.1038/35054095. Nature. 2001. PMID: 11206552
The transcriptional program in the response of human fibroblasts to serum.
Iyer VR, Eisen MB, Ross DT, Schuler G, Moore T, Lee JC, Trent JM, Staudt LM, Hudson J Jr, Boguski MS, Lashkari D, Shalon D, Botstein D, Brown PO. Iyer VR, et al. Science. 1999 Jan 1;283(5398):83-7. doi: 10.1126/science.283.5398.83. Science. 1999. PMID: 9872747
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.
Landt SG, Marinov GK, Kundaje A, Kheradpour P, Pauli F, Batzoglou S, Bernstein BE, Bickel P, Brown JB, Cayting P, Chen Y, DeSalvo G, Epstein C, Fisher-Aylor KI, Euskirchen G, Gerstein M, Gertz J, Hartemink AJ, Hoffman MM, Iyer VR, Jung YL, Karmakar S, Kellis M, Kharchenko PV, Li Q, Liu T, Liu XS, Ma L, Milosavljevic A, Myers RM, Park PJ, Pazin MJ, Perry MD, Raha D, Reddy TE, Rozowsky J, Shoresh N, Sidow A, Slattery M, Stamatoyannopoulos JA, Tolstorukov MY, White KP, Xi S, Farnham PJ, Lieb JD, Wold BJ, Snyder M. Landt SG, et al. Genome Res. 2012 Sep;22(9):1813-31. doi: 10.1101/gr.136184.111. Genome Res. 2012. PMID: 22955991 Free PMC article.
Characterizing the physical genome.
Pollack JR, Iyer VR. Pollack JR, et al. Nat Genet. 2002 Dec;32 Suppl:515-21. doi: 10.1038/ng1035. Nat Genet. 2002. PMID: 12454647 Review.
Microarray data visualization and analysis with the Longhorn Array Database (LAD).
Killion PJ, Iyer VR. Killion PJ, et al. Curr Protoc Bioinformatics. 2004 Dec;Chapter 7:Unit 7.10. doi: 10.1002/0471250953.bi0710s08. Curr Protoc Bioinformatics. 2004. PMID: 18428730
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