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eFORGE: A Tool for Identifying Cell Type-Specific Signal in Epigenomic Data.
Breeze CE, Paul DS, van Dongen J, Butcher LM, Ambrose JC, Barrett JE, Lowe R, Rakyan VK, Iotchkova V, Frontini M, Downes K, Ouwehand WH, Laperle J, Jacques PÉ, Bourque G, Bergmann AK, Siebert R, Vellenga E, Saeed S, Matarese F, Martens JHA, Stunnenberg HG, Teschendorff AE, Herrero J, Birney E, Dunham I, Beck S. Breeze CE, et al. Among authors: jacques pe. Cell Rep. 2016 Nov 15;17(8):2137-2150. doi: 10.1016/j.celrep.2016.10.059. Cell Rep. 2016. PMID: 27851974 Free PMC article.
The International Human Epigenome Consortium Data Portal.
Bujold D, Morais DAL, Gauthier C, Côté C, Caron M, Kwan T, Chen KC, Laperle J, Markovits AN, Pastinen T, Caron B, Veilleux A, Jacques PÉ, Bourque G. Bujold D, et al. Among authors: jacques pe. Cell Syst. 2016 Nov 23;3(5):496-499.e2. doi: 10.1016/j.cels.2016.10.019. Epub 2016 Nov 15. Cell Syst. 2016. PMID: 27863956 Free article.
The epiGenomic Efficient Correlator (epiGeEC) tool allows fast comparison of user datasets with thousands of public epigenomic datasets.
Laperle J, Hébert-Deschamps S, Raby J, de Lima Morais DA, Barrette M, Bujold D, Bastin C, Robert MA, Nadeau JF, Harel M, Nordell-Markovits A, Veilleux A, Bourque G, Jacques PÉ. Laperle J, et al. Among authors: jacques pe. Bioinformatics. 2019 Feb 15;35(4):674-676. doi: 10.1093/bioinformatics/bty655. Bioinformatics. 2019. PMID: 30052804 Free PMC article.
CanDIG: Federated network across Canada for multi-omic and health data discovery and analysis.
Dursi LJ, Bozoky Z, de Borja R, Li H, Bujold D, Lipski A, Rashid SF, Sethi A, Memon N, Naidoo D, Coral-Sasso F, Wong M, Quirion PO, Lu Z, Agarwal S, Pavlov Y, Ponomarev A, Husic M, Pace K, Palmer S, Grover SA, Hakgor S, Siu LL, Malkin D, Virtanen C, Pugh TJ, Jacques PÉ, Joly Y, Jones SJM, Bourque G, Brudno M. Dursi LJ, et al. Among authors: jacques pe. Cell Genom. 2021 Nov 10;1(2):100033. doi: 10.1016/j.xgen.2021.100033. eCollection 2021 Nov 10. Cell Genom. 2021. PMID: 36778585 Free PMC article.
Whole-genome reconstruction and mutational signatures in gastric cancer.
Nagarajan N, Bertrand D, Hillmer AM, Zang ZJ, Yao F, Jacques PÉ, Teo AS, Cutcutache I, Zhang Z, Lee WH, Sia YY, Gao S, Ariyaratne PN, Ho A, Woo XY, Veeravali L, Ong CK, Deng N, Desai KV, Khor CC, Hibberd ML, Shahab A, Rao J, Wu M, Teh M, Zhu F, Chin SY, Pang B, So JB, Bourque G, Soong R, Sung WK, Tean Teh B, Rozen S, Ruan X, Yeoh KG, Tan PB, Ruan Y. Nagarajan N, et al. Among authors: jacques pe. Genome Biol. 2012 Dec 13;13(12):R115. doi: 10.1186/gb-2012-13-12-r115. Genome Biol. 2012. PMID: 23237666 Free PMC article.
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