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67 results
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Data-based filtering for replicated high-throughput transcriptome sequencing experiments.
Rau A, Gallopin M, Celeux G, Jaffrézic F. Rau A, et al. Among authors: jaffrezic f. Bioinformatics. 2013 Sep 1;29(17):2146-52. doi: 10.1093/bioinformatics/btt350. Epub 2013 Jul 2. Bioinformatics. 2013. PMID: 23821648 Free PMC article.
Analysis of the real EADGENE data set: comparison of methods and guidelines for data normalisation and selection of differentially expressed genes (open access publication).
Jaffrézic F, de Koning DJ, Boettcher PJ, Bonnet A, Buitenhuis B, Closset R, Déjean S, Delmas C, Detilleux JC, Dovc P, Duval M, Foulley JL, Hedegaard J, Hornshøj H, Hulsegge I, Janss L, Jensen K, Jiang L, Lavric M, Lê Cao KA, Lund MS, Malinverni R, Marot G, Nie H, Petzl W, Pool MH, Robert-Granié C, San Cristobal M, van Schothorst EM, Schuberth HJ, Sørensen P, Stella A, Tosser-Klopp G, Waddington D, Watson M, Yang W, Zerbe H, Seyfert HM. Jaffrézic F, et al. Genet Sel Evol. 2007 Nov-Dec;39(6):633-50. doi: 10.1186/1297-9686-39-6-633. Epub 2007 Dec 6. Genet Sel Evol. 2007. PMID: 18053573 Free PMC article.
ExactDAS: an exact test procedure for the detection of differential alternative splicing in microarray experiments.
Mary-Huard T, Jaffrezic F, Robin S. Mary-Huard T, et al. Among authors: jaffrezic f. Stat Appl Genet Mol Biol. 2012 Nov 6;11(5):/j/sagmb.2012.11.issue-5/1544-6115.1814/1544-6115.1814.xml. doi: 10.1515/1544-6115.1814. Stat Appl Genet Mol Biol. 2012. PMID: 23152425
Identification of marginal causal relationships in gene networks from observational and interventional expression data.
Monneret G, Jaffrézic F, Rau A, Zerjal T, Nuel G. Monneret G, et al. Among authors: jaffrezic f. PLoS One. 2017 Mar 16;12(3):e0171142. doi: 10.1371/journal.pone.0171142. eCollection 2017. PLoS One. 2017. PMID: 28301504 Free PMC article.
Genetic and transcriptomic analyses provide new insights on the early antiviral response to VHSV in resistant and susceptible rainbow trout.
Verrier ER, Genet C, Laloë D, Jaffrezic F, Rau A, Esquerre D, Dechamp N, Ciobotaru C, Hervet C, Krieg F, Jouneau L, Klopp C, Quillet E, Boudinot P. Verrier ER, et al. Among authors: jaffrezic f. BMC Genomics. 2018 Jun 19;19(1):482. doi: 10.1186/s12864-018-4860-1. BMC Genomics. 2018. PMID: 29921219 Free PMC article.
Epithelial response to a high-protein diet in rat colon.
Beaumont M, Andriamihaja M, Armand L, Grauso M, Jaffrézic F, Laloë D, Moroldo M, Davila AM, Tomé D, Blachier F, Lan A. Beaumont M, et al. Among authors: jaffrezic f. BMC Genomics. 2017 Jan 31;18(1):116. doi: 10.1186/s12864-017-3514-z. BMC Genomics. 2017. PMID: 28137254 Free PMC article.
A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis.
Dillies MA, Rau A, Aubert J, Hennequet-Antier C, Jeanmougin M, Servant N, Keime C, Marot G, Castel D, Estelle J, Guernec G, Jagla B, Jouneau L, Laloë D, Le Gall C, Schaëffer B, Le Crom S, Guedj M, Jaffrézic F; French StatOmique Consortium. Dillies MA, et al. Among authors: jaffrezic f. Brief Bioinform. 2013 Nov;14(6):671-83. doi: 10.1093/bib/bbs046. Epub 2012 Sep 17. Brief Bioinform. 2013. PMID: 22988256
A structural mixed model for variances in differential gene expression studies.
Jaffrézic F, Marot G, Degrelle S, Hue I, Foulley JL. Jaffrézic F, et al. Genet Res. 2007 Feb;89(1):19-25. doi: 10.1017/S0016672307008646. Genet Res. 2007. PMID: 17517156
Moderated effect size and P-value combinations for microarray meta-analyses.
Marot G, Foulley JL, Mayer CD, Jaffrézic F. Marot G, et al. Among authors: jaffrezic f. Bioinformatics. 2009 Oct 15;25(20):2692-9. doi: 10.1093/bioinformatics/btp444. Epub 2009 Jul 23. Bioinformatics. 2009. PMID: 19628502
Gene network reconstruction from microarray data.
Jaffrezic F, Tosser-Klopp G. Jaffrezic F, et al. BMC Proc. 2009 Jul 16;3 Suppl 4(Suppl 4):S12. doi: 10.1186/1753-6561-3-S4-S12. BMC Proc. 2009. PMID: 19615112 Free PMC article.
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