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Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes.
Prasad TS, Mohanty AK, Kumar M, Sreenivasamurthy SK, Dey G, Nirujogi RS, Pinto SM, Madugundu AK, Patil AH, Advani J, Manda SS, Gupta MK, Dwivedi SB, Kelkar DS, Hall B, Jiang X, Peery A, Rajagopalan P, Yelamanchi SD, Solanki HS, Raja R, Sathe GJ, Chavan S, Verma R, Patel KM, Jain AP, Syed N, Datta KK, Khan AA, Dammalli M, Jayaram S, Radhakrishnan A, Mitchell CJ, Na CH, Kumar N, Sinnis P, Sharakhov IV, Wang C, Gowda H, Tu Z, Kumar A, Pandey A. Prasad TS, et al. Among authors: jain ap. Genome Res. 2017 Jan;27(1):133-144. doi: 10.1101/gr.201368.115. Epub 2016 Nov 15. Genome Res. 2017. PMID: 28003436 Free PMC article.
LC-MS-based serum metabolomic analysis reveals dysregulation of phosphatidylcholines in esophageal squamous cell carcinoma.
Mir SA, Rajagopalan P, Jain AP, Khan AA, Datta KK, Mohan SV, Lateef SS, Sahasrabuddhe N, Somani BL, Keshava Prasad TS, Chatterjee A, Veerendra Kumar KV, VijayaKumar M, Kumar RV, Gundimeda S, Pandey A, Gowda H. Mir SA, et al. Among authors: jain ap. J Proteomics. 2015 Sep 8;127(Pt A):96-102. doi: 10.1016/j.jprot.2015.05.013. Epub 2015 May 14. J Proteomics. 2015. PMID: 25982385
A dual specificity kinase, DYRK1A, as a potential therapeutic target for head and neck squamous cell carcinoma.
Radhakrishnan A, Nanjappa V, Raja R, Sathe G, Puttamallesh VN, Jain AP, Pinto SM, Balaji SA, Chavan S, Sahasrabuddhe NA, Mathur PP, Kumar MM, Prasad TS, Santosh V, Sukumar G, Califano JA, Rangarajan A, Sidransky D, Pandey A, Gowda H, Chatterjee A. Radhakrishnan A, et al. Among authors: jain ap. Sci Rep. 2016 Oct 31;6:36132. doi: 10.1038/srep36132. Sci Rep. 2016. PMID: 27796319 Free PMC article.
Corrigendum: A dual specificity kinase, DYRK1A, as a potential therapeutic target for head and neck squamous cell carcinoma.
Radhakrishnan A, Nanjappa V, Raja R, Sathe G, Puttamallesh VN, Jain AP, Pinto SM, Balaji SA, Chavan S, Sahasrabuddhe NA, Mathur PP, Kumar MM, Prasad TSK, Santosh V, Sukumar G, Califano JA, Rangarajan A, Sidransky D, Pandey A, Gowda H, Chatterjee A. Radhakrishnan A, et al. Among authors: jain ap. Sci Rep. 2017 Jun 26;7:46864. doi: 10.1038/srep46864. Sci Rep. 2017. PMID: 28650432 Free PMC article.
Long-Term Cigarette Smoke Exposure and Changes in MiRNA Expression and Proteome in Non-Small-Cell Lung Cancer.
Advani J, Subbannayya Y, Patel K, Khan AA, Patil AH, Jain AP, Solanki HS, Radhakrishnan A, Pinto SM, Sahasrabuddhe NA, Thomas JK, Mathur PP, Nair BG, Chang X, Prasad TSK, Sidransky D, Gowda H, Chatterjee A. Advani J, et al. Among authors: jain ap. OMICS. 2017 Jul;21(7):390-403. doi: 10.1089/omi.2017.0045. OMICS. 2017. PMID: 28692419 Free PMC article.
Cigarette smoke induces mitochondrial metabolic reprogramming in lung cells.
Solanki HS, Babu N, Jain AP, Bhat MY, Puttamallesh VN, Advani J, Raja R, Mangalaparthi KK, Kumar MM, Prasad TSK, Mathur PP, Sidransky D, Gowda H, Chatterjee A. Solanki HS, et al. Among authors: jain ap. Mitochondrion. 2018 May;40:58-70. doi: 10.1016/j.mito.2017.10.002. Epub 2017 Oct 16. Mitochondrion. 2018. PMID: 29042306
Role of protein kinase N2 (PKN2) in cigarette smoke-mediated oncogenic transformation of oral cells.
Rajagopalan P, Nanjappa V, Patel K, Jain AP, Mangalaparthi KK, Patil AH, Nair B, Mathur PP, Keshava Prasad TS, Califano JA, Sidransky D, Gowda H, Chatterjee A. Rajagopalan P, et al. Among authors: jain ap. J Cell Commun Signal. 2018 Dec;12(4):709-721. doi: 10.1007/s12079-017-0442-2. Epub 2018 Feb 26. J Cell Commun Signal. 2018. PMID: 29480433 Free PMC article.
Molecular alterations associated with chronic exposure to cigarette smoke and chewing tobacco in normal oral keratinocytes.
Rajagopalan P, Patel K, Jain AP, Nanjappa V, Datta KK, Subbannayya T, Mangalaparthi KK, Kumari A, Manoharan M, Coral K, Murugan S, Nair B, Prasad TSK, Mathur PP, Gupta R, Gupta R, Khanna-Gupta A, Califano J, Sidransky D, Gowda H, Chatterjee A. Rajagopalan P, et al. Among authors: jain ap. Cancer Biol Ther. 2018;19(9):773-785. doi: 10.1080/15384047.2018.1470724. Epub 2018 May 29. Cancer Biol Ther. 2018. PMID: 29723088 Free PMC article.
133 results