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CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure.
Jakobsson M, Rosenberg NA. Jakobsson M, et al. Bioinformatics. 2007 Jul 15;23(14):1801-6. doi: 10.1093/bioinformatics/btm233. Epub 2007 May 7. Bioinformatics. 2007. PMID: 17485429
Clumpak: a program for identifying clustering modes and packaging population structure inferences across K.
Kopelman NM, Mayzel J, Jakobsson M, Rosenberg NA, Mayrose I. Kopelman NM, et al. Among authors: jakobsson m. Mol Ecol Resour. 2015 Sep;15(5):1179-91. doi: 10.1111/1755-0998.12387. Epub 2015 Feb 27. Mol Ecol Resour. 2015. PMID: 25684545 Free PMC article.
HaploPOP: a software that improves population assignment by combining markers into haplotypes.
Duforet-Frebourg N, Gattepaille LM, Blum MG, Jakobsson M. Duforet-Frebourg N, et al. Among authors: jakobsson m. BMC Bioinformatics. 2015 Jul 31;16:242. doi: 10.1186/s12859-015-0661-6. BMC Bioinformatics. 2015. PMID: 26227424 Free PMC article.
The HaploPOP software is freely available as a command-line software at www.ieg.uu.se/Jakobsson/software/HaploPOP/....
The HaploPOP software is freely available as a command-line software at www.ieg.uu.se/Jakobsson/software/HaploPOP/....
Investigating population history using temporal genetic differentiation.
Skoglund P, Sjödin P, Skoglund T, Lascoux M, Jakobsson M. Skoglund P, et al. Among authors: jakobsson m. Mol Biol Evol. 2014 Sep;31(9):2516-27. doi: 10.1093/molbev/msu192. Epub 2014 Jun 17. Mol Biol Evol. 2014. PMID: 24939468 Free PMC article.
Joint analysis of demography and selection in population genetics: where do we stand and where could we go?
Li J, Li H, Jakobsson M, Li S, Sjödin P, Lascoux M. Li J, et al. Among authors: jakobsson m. Mol Ecol. 2012 Jan;21(1):28-44. doi: 10.1111/j.1365-294X.2011.05308.x. Epub 2011 Oct 14. Mol Ecol. 2012. PMID: 21999307 Review.
Combining markers into haplotypes can improve population structure inference.
Gattepaille LM, Jakobsson M. Gattepaille LM, et al. Among authors: jakobsson m. Genetics. 2012 Jan;190(1):159-74. doi: 10.1534/genetics.111.131136. Epub 2011 Aug 25. Genetics. 2012. PMID: 21868606 Free PMC article.
COMPASS: a program for generating serial samples under an infinite sites model.
Jakobsson M. Jakobsson M. Bioinformatics. 2009 Nov 1;25(21):2845-7. doi: 10.1093/bioinformatics/btp534. Epub 2009 Sep 17. Bioinformatics. 2009. PMID: 19762347
AVAILABILITY: The program and the manual are available at: http://www.egs.uu.se/evbiol/Research/JakobssonLab/compass.html CONTACT: mattias.jakobsson@ebc.uu.se....
AVAILABILITY: The program and the manual are available at: http://www.egs.uu.se/evbiol/Research/JakobssonLab/compass.html CONTACT: mattias. …
The evolutionary history of the common chloroplast genome of Arabidopsis thaliana and A. suecica.
Jakobsson M, Säll T, Lind-Halldén C, Halldén C. Jakobsson M, et al. J Evol Biol. 2007 Jan;20(1):104-21. doi: 10.1111/j.1420-9101.2006.01217.x. J Evol Biol. 2007. PMID: 17210004
Comparing spatial maps of human population-genetic variation using Procrustes analysis.
Wang C, Szpiech ZA, Degnan JH, Jakobsson M, Pemberton TJ, Hardy JA, Singleton AB, Rosenberg NA. Wang C, et al. Among authors: jakobsson m. Stat Appl Genet Mol Biol. 2010;9(1):Article 13. doi: 10.2202/1544-6115.1493. Epub 2010 Jan 27. Stat Appl Genet Mol Biol. 2010. PMID: 20196748 Free PMC article.
The relationship between homozygosity and the frequency of the most frequent allele.
Rosenberg NA, Jakobsson M. Rosenberg NA, et al. Among authors: jakobsson m. Genetics. 2008 Aug;179(4):2027-36. doi: 10.1534/genetics.107.084772. Epub 2008 Aug 9. Genetics. 2008. PMID: 18689892 Free PMC article.
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