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104 results
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Integrative systems biology approaches to identify and prioritize disease and drug candidate genes.
Kaimal V, Sardana D, Bardes EE, Gudivada RC, Chen J, Jegga AG. Kaimal V, et al. Among authors: jegga ag. Methods Mol Biol. 2011;700:241-59. doi: 10.1007/978-1-61737-954-3_16. Methods Mol Biol. 2011. PMID: 21204038
Detection and visualization of compositionally similar cis-regulatory element clusters in orthologous and coordinately controlled genes.
Jegga AG, Sherwood SP, Carman JW, Pinski AT, Phillips JL, Pestian JP, Aronow BJ. Jegga AG, et al. Genome Res. 2002 Sep;12(9):1408-17. doi: 10.1101/gr.255002. Genome Res. 2002. PMID: 12213778 Free PMC article.
Microarray and comparative genomics-based identification of genes and gene regulatory regions of the mouse immune system.
Hutton JJ, Jegga AG, Kong S, Gupta A, Ebert C, Williams S, Katz JD, Aronow BJ. Hutton JJ, et al. Among authors: jegga ag. BMC Genomics. 2004 Oct 25;5:82. doi: 10.1186/1471-2164-5-82. BMC Genomics. 2004. PMID: 15504237 Free PMC article.
CisMols Analyzer: identification of compositionally similar cis-element clusters in ortholog conserved regions of coordinately expressed genes.
Jegga AG, Gupta A, Gowrisankar S, Deshmukh MA, Connolly S, Finley K, Aronow BJ. Jegga AG, et al. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W408-11. doi: 10.1093/nar/gki486. Nucleic Acids Res. 2005. PMID: 15980500 Free PMC article.
Large-scale molecular comparison of human schwann cells to malignant peripheral nerve sheath tumor cell lines and tissues.
Miller SJ, Rangwala F, Williams J, Ackerman P, Kong S, Jegga AG, Kaiser S, Aronow BJ, Frahm S, Kluwe L, Mautner V, Upadhyaya M, Muir D, Wallace M, Hagen J, Quelle DE, Watson MA, Perry A, Gutmann DH, Ratner N. Miller SJ, et al. Among authors: jegga ag. Cancer Res. 2006 Mar 1;66(5):2584-91. doi: 10.1158/0008-5472.CAN-05-3330. Cancer Res. 2006. PMID: 16510576
PolyDoms: a whole genome database for the identification of non-synonymous coding SNPs with the potential to impact disease.
Jegga AG, Gowrisankar S, Chen J, Aronow BJ. Jegga AG, et al. Nucleic Acids Res. 2007 Jan;35(Database issue):D700-6. doi: 10.1093/nar/gkl826. Epub 2006 Nov 16. Nucleic Acids Res. 2007. PMID: 17142238 Free PMC article.
GenomeTrafac: a whole genome resource for the detection of transcription factor binding site clusters associated with conventional and microRNA encoding genes conserved between mouse and human gene orthologs.
Jegga AG, Chen J, Gowrisankar S, Deshmukh MA, Gudivada R, Kong S, Kaimal V, Aronow BJ. Jegga AG, et al. Nucleic Acids Res. 2007 Jan;35(Database issue):D116-21. doi: 10.1093/nar/gkl1011. Epub 2006 Dec 18. Nucleic Acids Res. 2007. PMID: 17178752 Free PMC article.
Loss of the retinoblastoma tumor suppressor: differential action on transcriptional programs related to cell cycle control and immune function.
Markey MP, Bergseid J, Bosco EE, Stengel K, Xu H, Mayhew CN, Schwemberger SJ, Braden WA, Jiang Y, Babcock GF, Jegga AG, Aronow BJ, Reed MF, Wang JY, Knudsen ES. Markey MP, et al. Among authors: jegga ag. Oncogene. 2007 Sep 20;26(43):6307-18. doi: 10.1038/sj.onc.1210450. Epub 2007 Apr 23. Oncogene. 2007. PMID: 17452985
Transcriptional recapitulation and subversion of embryonic colon development by mouse colon tumor models and human colon cancer.
Kaiser S, Park YK, Franklin JL, Halberg RB, Yu M, Jessen WJ, Freudenberg J, Chen X, Haigis K, Jegga AG, Kong S, Sakthivel B, Xu H, Reichling T, Azhar M, Boivin GP, Roberts RB, Bissahoyo AC, Gonzales F, Bloom GC, Eschrich S, Carter SL, Aronow JE, Kleimeyer J, Kleimeyer M, Ramaswamy V, Settle SH, Boone B, Levy S, Graff JM, Doetschman T, Groden J, Dove WF, Threadgill DW, Yeatman TJ, Coffey RJ Jr, Aronow BJ. Kaiser S, et al. Among authors: jegga ag. Genome Biol. 2007;8(7):R131. doi: 10.1186/gb-2007-8-7-r131. Genome Biol. 2007. PMID: 17615082 Free PMC article.
Improved human disease candidate gene prioritization using mouse phenotype.
Chen J, Xu H, Aronow BJ, Jegga AG. Chen J, et al. Among authors: jegga ag. BMC Bioinformatics. 2007 Oct 16;8:392. doi: 10.1186/1471-2105-8-392. BMC Bioinformatics. 2007. PMID: 17939863 Free PMC article.
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