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329 results
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Searching for footprints of positive selection in whole-genome SNP data from nonequilibrium populations.
Pavlidis P, Jensen JD, Stephan W. Pavlidis P, et al. Among authors: jensen jd. Genetics. 2010 Jul;185(3):907-22. doi: 10.1534/genetics.110.116459. Epub 2010 Apr 20. Genetics. 2010. PMID: 20407129 Free PMC article.
A draft sequence of the Neandertal genome.
Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MH, Hansen NF, Durand EY, Malaspinas AS, Jensen JD, Marques-Bonet T, Alkan C, Prüfer K, Meyer M, Burbano HA, Good JM, Schultz R, Aximu-Petri A, Butthof A, Höber B, Höffner B, Siegemund M, Weihmann A, Nusbaum C, Lander ES, Russ C, Novod N, Affourtit J, Egholm M, Verna C, Rudan P, Brajkovic D, Kucan Ž, Gušic I, Doronichev VB, Golovanova LV, Lalueza-Fox C, de la Rasilla M, Fortea J, Rosas A, Schmitz RW, Johnson PLF, Eichler EE, Falush D, Birney E, Mullikin JC, Slatkin M, Nielsen R, Kelso J, Lachmann M, Reich D, Pääbo S. Green RE, et al. Among authors: jensen jd. Science. 2010 May 7;328(5979):710-722. doi: 10.1126/science.1188021. Science. 2010. PMID: 20448178 Free PMC article.
Inferring selection in partially sequenced regions.
Jensen JD, Thornton KR, Aquadro CF. Jensen JD, et al. Mol Biol Evol. 2008 Feb;25(2):438-46. doi: 10.1093/molbev/msm273. Epub 2007 Dec 28. Mol Biol Evol. 2008. PMID: 18165259
Approaches for identifying targets of positive selection.
Jensen JD, Wong A, Aquadro CF. Jensen JD, et al. Trends Genet. 2007 Nov;23(11):568-77. doi: 10.1016/j.tig.2007.08.009. Epub 2007 Oct 23. Trends Genet. 2007. PMID: 17959267 Review.
Patterns of sequence variability and divergence at the diminutive gene region of Drosophila melanogaster: complex patterns suggest an ancestral selective sweep.
Jensen JD, Bauer DuMont VL, Ashmore AB, Gutierrez A, Aquadro CF. Jensen JD, et al. Genetics. 2007 Oct;177(2):1071-85. doi: 10.1534/genetics.106.069468. Epub 2007 Aug 24. Genetics. 2007. PMID: 17720938 Free PMC article.
On the utility of linkage disequilibrium as a statistic for identifying targets of positive selection in nonequilibrium populations.
Jensen JD, Thornton KR, Bustamante CD, Aquadro CF. Jensen JD, et al. Genetics. 2007 Aug;176(4):2371-9. doi: 10.1534/genetics.106.069450. Epub 2007 Jun 11. Genetics. 2007. PMID: 17565955 Free PMC article.
Controlling the false-positive rate in multilocus genome scans for selection.
Thornton KR, Jensen JD. Thornton KR, et al. Among authors: jensen jd. Genetics. 2007 Feb;175(2):737-50. doi: 10.1534/genetics.106.064642. Epub 2006 Nov 16. Genetics. 2007. PMID: 17110489 Free PMC article.
Distinguishing between selective sweeps and demography using DNA polymorphism data.
Jensen JD, Kim Y, DuMont VB, Aquadro CF, Bustamante CD. Jensen JD, et al. Genetics. 2005 Jul;170(3):1401-10. doi: 10.1534/genetics.104.038224. Epub 2005 May 23. Genetics. 2005. PMID: 15911584 Free PMC article.
To pool, or not to pool?
Cutler DJ, Jensen JD. Cutler DJ, et al. Among authors: jensen jd. Genetics. 2010 Sep;186(1):41-3. doi: 10.1534/genetics.110.121012. Genetics. 2010. PMID: 20855575 Free PMC article. No abstract available.
Inferences of demography and selection in an African population of Drosophila melanogaster.
Singh ND, Jensen JD, Clark AG, Aquadro CF. Singh ND, et al. Among authors: jensen jd. Genetics. 2013 Jan;193(1):215-28. doi: 10.1534/genetics.112.145318. Epub 2012 Oct 26. Genetics. 2013. PMID: 23105013 Free PMC article.
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