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Prediction of novel archaeal enzymes from sequence-derived features.
Jensen LJ, Skovgaard M, Brunak S. Jensen LJ, et al. Protein Sci. 2002 Dec;11(12):2894-8. doi: 10.1110/ps.0225102. Protein Sci. 2002. PMID: 12441387 Free PMC article.
Feature-based prediction of non-classical and leaderless protein secretion.
Bendtsen JD, Jensen LJ, Blom N, Von Heijne G, Brunak S. Bendtsen JD, et al. Among authors: jensen lj. Protein Eng Des Sel. 2004 Apr;17(4):349-56. doi: 10.1093/protein/gzh037. Epub 2004 Apr 28. Protein Eng Des Sel. 2004. PMID: 15115854
Linear motif atlas for phosphorylation-dependent signaling.
Miller ML, Jensen LJ, Diella F, Jørgensen C, Tinti M, Li L, Hsiung M, Parker SA, Bordeaux J, Sicheritz-Ponten T, Olhovsky M, Pasculescu A, Alexander J, Knapp S, Blom N, Bork P, Li S, Cesareni G, Pawson T, Turk BE, Yaffe MB, Brunak S, Linding R. Miller ML, et al. Among authors: jensen lj. Sci Signal. 2008 Sep 2;1(35):ra2. doi: 10.1126/scisignal.1159433. Sci Signal. 2008. PMID: 18765831 Free PMC article. comprehensive multi-organism online database of cell-cycle experiments.
Gauthier NP, Larsen ME, Wernersson R, de Lichtenberg U, Jensen LJ, Brunak S, Jensen TS. Gauthier NP, et al. Among authors: jensen lj, jensen ts. Nucleic Acids Res. 2008 Jan;36(Database issue):D854-9. doi: 10.1093/nar/gkm729. Epub 2007 Oct 16. Nucleic Acids Res. 2008. PMID: 17940094 Free PMC article.
Crystal ball. Systems biology: in the broadest sense of the word.
Ussery DW, de Lichtenberg U, Jensen LJ. Ussery DW, et al. Among authors: jensen lj. Environ Microbiol. 2005 Apr;7(4):482-3. doi: 10.1111/j.1462-2920.2005.803_12.x. Environ Microbiol. 2005. PMID: 15816924 No abstract available.
Functionality of system components: conservation of protein function in protein feature space.
Jensen LJ, Ussery DW, Brunak S. Jensen LJ, et al. Genome Res. 2003 Nov;13(11):2444-9. doi: 10.1101/gr.1190803. Epub 2003 Oct 14. Genome Res. 2003. PMID: 14559779 Free PMC article.
Analysis of two large functionally uncharacterized regions in the Methanopyrus kandleri AV19 genome.
Jensen LJ, Skovgaard M, Sicheritz-Pontén T, Jørgensen MK, Lundegaard C, Pedersen CC, Petersen N, Ussery D. Jensen LJ, et al. BMC Genomics. 2003 Apr 2;4(1):12. doi: 10.1186/1471-2164-4-12. Epub 2003 Apr 2. BMC Genomics. 2003. PMID: 12697059 Free PMC article.
Comparison of computational methods for the identification of cell cycle-regulated genes.
de Lichtenberg U, Jensen LJ, Fausbøll A, Jensen TS, Bork P, Brunak S. de Lichtenberg U, et al. Among authors: jensen lj, jensen ts. Bioinformatics. 2005 Apr 1;21(7):1164-71. doi: 10.1093/bioinformatics/bti093. Epub 2004 Oct 28. Bioinformatics. 2005. PMID: 15513999
Dynamic complex formation during the yeast cell cycle.
de Lichtenberg U, Jensen LJ, Brunak S, Bork P. de Lichtenberg U, et al. Among authors: jensen lj. Science. 2005 Feb 4;307(5710):724-7. doi: 10.1126/science.1105103. Science. 2005. PMID: 15692050
Evolution of cell cycle control: same molecular machines, different regulation.
de Lichtenberg U, Jensen TS, Brunak S, Bork P, Jensen LJ. de Lichtenberg U, et al. Among authors: jensen ts, jensen lj. Cell Cycle. 2007 Aug 1;6(15):1819-25. doi: 10.4161/cc.6.15.4537. Epub 2007 Jun 4. Cell Cycle. 2007. PMID: 17671420
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