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Feature-based prediction of non-classical and leaderless protein secretion.
Bendtsen JD, Jensen LJ, Blom N, Von Heijne G, Brunak S. Bendtsen JD, et al. Protein Eng Des Sel. 2004 Apr;17(4):349-56. doi: 10.1093/protein/gzh037. Epub 2004 Apr 28. Protein Eng Des Sel. 2004. PMID: 15115854
Protein annotation in the era of personal genomics.
Blicher T, Gupta R, Wesolowska A, Jensen LJ, Brunak S. Blicher T, et al. Curr Opin Struct Biol. 2010 Jun;20(3):335-41. doi: 10.1016/ Epub 2010 Apr 18. Curr Opin Struct Biol. 2010. PMID: 20403684
Linear motif atlas for phosphorylation-dependent signaling.
Miller ML, Jensen LJ, Diella F, Jørgensen C, Tinti M, Li L, Hsiung M, Parker SA, Bordeaux J, Sicheritz-Ponten T, Olhovsky M, Pasculescu A, Alexander J, Knapp S, Blom N, Bork P, Li S, Cesareni G, Pawson T, Turk BE, Yaffe MB, Brunak S, Linding R. Miller ML, et al. Sci Signal. 2008 Sep 2;1(35):ra2. doi: 10.1126/scisignal.1159433. Sci Signal. 2008. PMID: 18765831 Free PMC article.
Evolution of cell cycle control: same molecular machines, different regulation.
de Lichtenberg U, Jensen TS, Brunak S, Bork P, Jensen LJ. de Lichtenberg U, et al. Cell Cycle. 2007 Aug 1;6(15):1819-25. doi: 10.4161/cc.6.15.4537. Epub 2007 Jun 4. Cell Cycle. 2007. PMID: 17671420
Crystal ball. Systems biology: in the broadest sense of the word.
Ussery DW, de Lichtenberg U, Jensen LJ. Ussery DW, et al. Environ Microbiol. 2005 Apr;7(4):482-3. doi: 10.1111/j.1462-2920.2005.803_12.x. Environ Microbiol. 2005. PMID: 15816924 No abstract available.
Comparison of computational methods for the identification of cell cycle-regulated genes.
de Lichtenberg U, Jensen LJ, Fausbøll A, Jensen TS, Bork P, Brunak S. de Lichtenberg U, et al. Bioinformatics. 2005 Apr 1;21(7):1164-71. doi: 10.1093/bioinformatics/bti093. Epub 2004 Oct 28. Bioinformatics. 2005. PMID: 15513999
Prediction of novel archaeal enzymes from sequence-derived features.
Jensen LJ, Skovgaard M, Brunak S. Jensen LJ, et al. Protein Sci. 2002 Dec;11(12):2894-8. doi: 10.1110/ps.0225102. Protein Sci. 2002. PMID: 12441387 Free PMC article.
Analysis of two large functionally uncharacterized regions in the Methanopyrus kandleri AV19 genome.
Jensen LJ, Skovgaard M, Sicheritz-Pontén T, Jørgensen MK, Lundegaard C, Pedersen CC, Petersen N, Ussery D. Jensen LJ, et al. BMC Genomics. 2003 Apr 2;4(1):12. doi: 10.1186/1471-2164-4-12. Epub 2003 Apr 2. BMC Genomics. 2003. PMID: 12697059 Free PMC article.
Dynamic complex formation during the yeast cell cycle.
de Lichtenberg U, Jensen LJ, Brunak S, Bork P. de Lichtenberg U, et al. Science. 2005 Feb 4;307(5710):724-7. doi: 10.1126/science.1105103. Science. 2005. PMID: 15692050
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