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From Phosphosites to Kinases.
Munk S, Refsgaard JC, Olsen JV, Jensen LJ. Munk S, et al. Methods Mol Biol. 2016;1355:307-21. doi: 10.1007/978-1-4939-3049-4_21. Methods Mol Biol. 2016. PMID: 26584935 Review.
Sequence-based feature prediction and annotation of proteins.
Juncker AS, Jensen LJ, Pierleoni A, Bernsel A, Tress ML, Bork P, von Heijne G, Valencia A, Ouzounis CA, Casadio R, Brunak S. Juncker AS, et al. Genome Biol. 2009 Feb 2;10(2):206. doi: 10.1186/gb-2009-10-2-206. Genome Biol. 2009. PMID: 19226438 Free PMC article.
Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level.
Danielsen JM, Sylvestersen KB, Bekker-Jensen S, Szklarczyk D, Poulsen JW, Horn H, Jensen LJ, Mailand N, Nielsen ML. Danielsen JM, et al. Mol Cell Proteomics. 2011 Mar;10(3):M110.003590. doi: 10.1074/mcp.M110.003590. Epub 2010 Dec 7. Mol Cell Proteomics. 2011. PMID: 21139048 Free PMC article.
In vivo phosphoproteomics analysis reveals the cardiac targets of β-adrenergic receptor signaling.
Lundby A, Andersen MN, Steffensen AB, Horn H, Kelstrup CD, Francavilla C, Jensen LJ, Schmitt N, Thomsen MB, Olsen JV. Lundby A, et al. Sci Signal. 2013 Jun 4;6(278):rs11. doi: 10.1126/scisignal.2003506. Sci Signal. 2013. PMID: 23737553
Are graph databases ready for bioinformatics?
Have CT, Jensen LJ. Have CT, et al. Bioinformatics. 2013 Dec 15;29(24):3107-8. doi: 10.1093/bioinformatics/btt549. Epub 2013 Oct 17. Bioinformatics. 2013. PMID: 24135261 Free PMC article.
Protein-driven inference of miRNA-disease associations.
Mørk S, Pletscher-Frankild S, Palleja Caro A, Gorodkin J, Jensen LJ. Mørk S, et al. Bioinformatics. 2014 Feb 1;30(3):392-7. doi: 10.1093/bioinformatics/btt677. Epub 2013 Nov 21. Bioinformatics. 2014. PMID: 24273243 Free PMC article.
Proteomic analysis of arginine methylation sites in human cells reveals dynamic regulation during transcriptional arrest.
Sylvestersen KB, Horn H, Jungmichel S, Jensen LJ, Nielsen ML. Sylvestersen KB, et al. Mol Cell Proteomics. 2014 Aug;13(8):2072-88. doi: 10.1074/mcp.O113.032748. Epub 2014 Feb 21. Mol Cell Proteomics. 2014. PMID: 24563534 Free PMC article.
Predicting kinase activity in angiotensin receptor phosphoproteomes based on sequence-motifs and interactions.
Bøgebo R, Horn H, Olsen JV, Gammeltoft S, Jensen LJ, Hansen JL, Christensen GL. Bøgebo R, et al. PLoS One. 2014 Apr 10;9(4):e94672. doi: 10.1371/journal.pone.0094672. eCollection 2014. PLoS One. 2014. PMID: 24722691 Free PMC article.
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