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Viruses.STRING: A Virus-Host Protein-Protein Interaction Database.
Cook HV, Doncheva NT, Szklarczyk D, von Mering C, Jensen LJ. Cook HV, et al. Among authors: jensen lj. Viruses. 2018 Sep 23;10(10):519. doi: 10.3390/v10100519. Viruses. 2018. PMID: 30249048 Free PMC article.
Protein-driven inference of miRNA-disease associations.
Mørk S, Pletscher-Frankild S, Palleja Caro A, Gorodkin J, Jensen LJ. Mørk S, et al. Among authors: jensen lj. Bioinformatics. 2014 Feb 1;30(3):392-7. doi: 10.1093/bioinformatics/btt677. Epub 2013 Nov 21. Bioinformatics. 2014. PMID: 24273243 Free PMC article.
DISEASES: text mining and data integration of disease-gene associations.
Pletscher-Frankild S, Pallejà A, Tsafou K, Binder JX, Jensen LJ. Pletscher-Frankild S, et al. Among authors: jensen lj. Methods. 2015 Mar;74:83-9. doi: 10.1016/j.ymeth.2014.11.020. Epub 2014 Dec 5. Methods. 2015. PMID: 25484339
Protein-protein interaction databases.
Szklarczyk D, Jensen LJ. Szklarczyk D, et al. Among authors: jensen lj. Methods Mol Biol. 2015;1278:39-56. doi: 10.1007/978-1-4939-2425-7_3. Methods Mol Biol. 2015. PMID: 25859942
From Phosphosites to Kinases.
Munk S, Refsgaard JC, Olsen JV, Jensen LJ. Munk S, et al. Among authors: jensen lj. Methods Mol Biol. 2016;1355:307-21. doi: 10.1007/978-1-4939-3049-4_21. Methods Mol Biol. 2016. PMID: 26584935 Review.
Search Databases and Statistics: Pitfalls and Best Practices in Phosphoproteomics.
Refsgaard JC, Munk S, Jensen LJ. Refsgaard JC, et al. Among authors: jensen lj. Methods Mol Biol. 2016;1355:323-39. doi: 10.1007/978-1-4939-3049-4_22. Methods Mol Biol. 2016. PMID: 26584936 Review.
SVD-phy: improved prediction of protein functional associations through singular value decomposition of phylogenetic profiles.
Franceschini A, Lin J, von Mering C, Jensen LJ. Franceschini A, et al. Among authors: jensen lj. Bioinformatics. 2016 Apr 1;32(7):1085-7. doi: 10.1093/bioinformatics/btv696. Epub 2015 Nov 26. Bioinformatics. 2016. PMID: 26614125 Free PMC article.
AVAILABILITY AND IMPLEMENTATION: The software is available under the open-source BSD license at https://bitbucket.org/andrea/svd-phy CONTACT: lars.juhl.jensen@cpr.ku.dk SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online....
AVAILABILITY AND IMPLEMENTATION: The software is available under the open-source BSD license at https://bitbucket.org/andrea/svd-phy CONTACT …
The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.
Szklarczyk D, Morris JH, Cook H, Kuhn M, Wyder S, Simonovic M, Santos A, Doncheva NT, Roth A, Bork P, Jensen LJ, von Mering C. Szklarczyk D, et al. Among authors: jensen lj. Nucleic Acids Res. 2017 Jan 4;45(D1):D362-D368. doi: 10.1093/nar/gkw937. Epub 2016 Oct 18. Nucleic Acids Res. 2017. PMID: 27924014 Free PMC article.
LocText: relation extraction of protein localizations to assist database curation.
Cejuela JM, Vinchurkar S, Goldberg T, Prabhu Shankar MS, Baghudana A, Bojchevski A, Uhlig C, Ofner A, Raharja-Liu P, Jensen LJ, Rost B. Cejuela JM, et al. Among authors: jensen lj. BMC Bioinformatics. 2018 Jan 17;19(1):15. doi: 10.1186/s12859-018-2021-9. BMC Bioinformatics. 2018. PMID: 29343218 Free PMC article.
TISSUES 2.0: an integrative web resource on mammalian tissue expression.
Palasca O, Santos A, Stolte C, Gorodkin J, Jensen LJ. Palasca O, et al. Among authors: jensen lj. Database (Oxford). 2018 Jan 1;2018:bay003. doi: 10.1093/database/bay003. Database (Oxford). 2018. PMID: 29617745 Free PMC article.
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