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OnTheFly2.0: a text-mining web application for automated biomedical entity recognition, document annotation, network and functional enrichment analysis.
Baltoumas FA, Zafeiropoulou S, Karatzas E, Paragkamian S, Thanati F, Iliopoulos I, Eliopoulos AG, Schneider R, Jensen LJ, Pafilis E, Pavlopoulos GA. Baltoumas FA, et al. Among authors: jensen lj. NAR Genom Bioinform. 2021 Oct 6;3(4):lqab090. doi: 10.1093/nargab/lqab090. eCollection 2021 Dec. NAR Genom Bioinform. 2021. PMID: 34632381 Free PMC article.
ENVIRONMENTS and EOL: identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life.
Pafilis E, Frankild SP, Schnetzer J, Fanini L, Faulwetter S, Pavloudi C, Vasileiadou K, Leary P, Hammock J, Schulz K, Parr CS, Arvanitidis C, Jensen LJ. Pafilis E, et al. Among authors: jensen lj. Bioinformatics. 2015 Jun 1;31(11):1872-4. doi: 10.1093/bioinformatics/btv045. Epub 2015 Jan 24. Bioinformatics. 2015. PMID: 25619994 Free PMC article.
Seqenv: linking sequences to environments through text mining.
Sinclair L, Ijaz UZ, Jensen LJ, Coolen MJL, Gubry-Rangin C, Chroňáková A, Oulas A, Pavloudi C, Schnetzer J, Weimann A, Ijaz A, Eiler A, Quince C, Pafilis E. Sinclair L, et al. Among authors: jensen lj. PeerJ. 2016 Dec 20;4:e2690. doi: 10.7717/peerj.2690. eCollection 2016. PeerJ. 2016. PMID: 28028456 Free PMC article.
SuperTarget and Matador: resources for exploring drug-target relationships.
Günther S, Kuhn M, Dunkel M, Campillos M, Senger C, Petsalaki E, Ahmed J, Urdiales EG, Gewiess A, Jensen LJ, Schneider R, Skoblo R, Russell RB, Bourne PE, Bork P, Preissner R. Günther S, et al. Among authors: jensen lj. Nucleic Acids Res. 2008 Jan;36(Database issue):D919-22. doi: 10.1093/nar/gkm862. Epub 2007 Oct 16. Nucleic Acids Res. 2008. PMID: 17942422 Free PMC article.
A Guide to Dictionary-Based Text Mining.
Cook HV, Jensen LJ. Cook HV, et al. Among authors: jensen lj. Methods Mol Biol. 2019;1939:73-89. doi: 10.1007/978-1-4939-9089-4_5. Methods Mol Biol. 2019. PMID: 30848457
301 results