Jensen PA - Search Results

1

TIGER: Toolbox for integrating genome-scale metabolic models, expression data, and transcriptional regulatory networks.

Jensen PA, Lutz KA, Papin JA. Jensen PA, et al. BMC Syst Biol. 2011 Sep 23;5:147. doi: 10.1186/1752-0509-5-147. BMC Syst Biol. 2011. PMID: 21943338 Free PMC article.

2

MetDraw: automated visualization of genome-scale metabolic network reconstructions and high-throughput data.

Jensen PA, Papin JA. Jensen PA, et al. Bioinformatics. 2014 May 1;30(9):1327-8. doi: 10.1093/bioinformatics/btt758. Epub 2014 Jan 9. Bioinformatics. 2014. PMID: 24413519 Free PMC article.

3

Metabolic network analysis predicts efficacy of FDA-approved drugs targeting the causative agent of a neglected tropical disease.

Chavali AK, Blazier AS, Tlaxca JL, Jensen PA, Pearson RD, Papin JA. Chavali AK, et al. Among authors: jensen pa. BMC Syst Biol. 2012 Apr 27;6:27. doi: 10.1186/1752-0509-6-27. BMC Syst Biol. 2012. PMID: 22540944 Free PMC article.

4

A scalable systems analysis approach for regulated metabolic networks.

Jensen PA, Papin JA. Jensen PA, et al. Annu Int Conf IEEE Eng Med Biol Soc. 2009;2009:5464-5. doi: 10.1109/IEMBS.2009.5334060. Annu Int Conf IEEE Eng Med Biol Soc. 2009. PMID: 19964682

5

Functional integration of a metabolic network model and expression data without arbitrary thresholding.

Jensen PA, Papin JA. Jensen PA, et al. Bioinformatics. 2011 Feb 15;27(4):541-7. doi: 10.1093/bioinformatics/btq702. Epub 2010 Dec 20. Bioinformatics. 2011. PMID: 21172910 Free PMC article.

6

Coupling Fluxes, Enzymes, and Regulation in Genome-Scale Metabolic Models.

Jensen PA. Jensen PA. Methods Mol Biol. 2018;1716:337-351. doi: 10.1007/978-1-4939-7528-0_15. Methods Mol Biol. 2018. PMID: 29222761 Review.

7

Miniaturized plate readers for low-cost, high-throughput phenotypic screening.

Jensen PA, Dougherty BV, Moutinho TJ Jr, Papin JA. Jensen PA, et al. J Lab Autom. 2015 Feb;20(1):51-5. doi: 10.1177/2211068214555414. Epub 2014 Nov 3. J Lab Autom. 2015. PMID: 25366331 Free PMC article.

8

Antibiotics Disrupt Coordination between Transcriptional and Phenotypic Stress Responses in Pathogenic Bacteria.

Jensen PA, Zhu Z, van Opijnen T. Jensen PA, et al. Cell Rep. 2017 Aug 15;20(7):1705-1716. doi: 10.1016/j.celrep.2017.07.062. Cell Rep. 2017. PMID: 28813680 Free PMC article.

9

A Reinforcement Learning Framework for Pooled Oligonucleotide Design.

David BM, Wyllie RM, Harouaka R, Jensen PA. David BM, et al. Among authors: jensen pa. Bioinformatics. 2022 Feb 10;38(8):2219-25. doi: 10.1093/bioinformatics/btac073. Online ahead of print. Bioinformatics. 2022. PMID: 35143615

10

Evaluation of multiple fixed in-room air cleaners with ultraviolet germicidal irradiation, in high-occupancy areas of selected commercial indoor environments.

Lee LD, Delclos G, Berkheiser ML, Barakat MT, Jensen PA. Lee LD, et al. Among authors: jensen pa. J Occup Environ Hyg. 2022 Jan;19(1):67-77. doi: 10.1080/15459624.2021.1991581. Epub 2021 Dec 16. J Occup Environ Hyg. 2022. PMID: 34647857

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