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MetDraw: automated visualization of genome-scale metabolic network reconstructions and high-throughput data.
Jensen PA, Papin JA. Jensen PA, et al. Bioinformatics. 2014 May 1;30(9):1327-8. doi: 10.1093/bioinformatics/btt758. Epub 2014 Jan 9. Bioinformatics. 2014. PMID: 24413519 Free PMC article.
Miniaturized plate readers for low-cost, high-throughput phenotypic screening.
Jensen PA, Dougherty BV, Moutinho TJ Jr, Papin JA. Jensen PA, et al. J Lab Autom. 2015 Feb;20(1):51-5. doi: 10.1177/2211068214555414. Epub 2014 Nov 3. J Lab Autom. 2015. PMID: 25366331 Free PMC article.
Metabolic network analysis predicts efficacy of FDA-approved drugs targeting the causative agent of a neglected tropical disease.
Chavali AK, Blazier AS, Tlaxca JL, Jensen PA, Pearson RD, Papin JA. Chavali AK, et al. Among authors: jensen pa. BMC Syst Biol. 2012 Apr 27;6:27. doi: 10.1186/1752-0509-6-27. BMC Syst Biol. 2012. PMID: 22540944 Free PMC article.
TIGER: Toolbox for integrating genome-scale metabolic models, expression data, and transcriptional regulatory networks.
Jensen PA, Lutz KA, Papin JA. Jensen PA, et al. BMC Syst Biol. 2011 Sep 23;5:147. doi: 10.1186/1752-0509-5-147. BMC Syst Biol. 2011. PMID: 21943338 Free PMC article.
A scalable systems analysis approach for regulated metabolic networks.
Jensen PA, Papin JA. Jensen PA, et al. Annu Int Conf IEEE Eng Med Biol Soc. 2009;2009:5464-5. doi: 10.1109/IEMBS.2009.5334060. Annu Int Conf IEEE Eng Med Biol Soc. 2009. PMID: 19964682
Functional integration of a metabolic network model and expression data without arbitrary thresholding.
Jensen PA, Papin JA. Jensen PA, et al. Bioinformatics. 2011 Feb 15;27(4):541-7. doi: 10.1093/bioinformatics/btq702. Epub 2010 Dec 20. Bioinformatics. 2011. PMID: 21172910 Free PMC article.
Coupling Fluxes, Enzymes, and Regulation in Genome-Scale Metabolic Models.
Jensen PA. Jensen PA. Methods Mol Biol. 2018;1716:337-351. doi: 10.1007/978-1-4939-7528-0_15. Methods Mol Biol. 2018. PMID: 29222761 Review.
Gapsplit: efficient random sampling for non-convex constraint-based models.
Keaty TC, Jensen PA. Keaty TC, et al. Among authors: jensen pa. Bioinformatics. 2020 Apr 15;36(8):2623-2625. doi: 10.1093/bioinformatics/btz971. Bioinformatics. 2020. PMID: 31913465
Droplet Tn-Seq combines microfluidics with Tn-Seq for identifying complex single-cell phenotypes.
Thibault D, Jensen PA, Wood S, Qabar C, Clark S, Shainheit MG, Isberg RR, van Opijnen T. Thibault D, et al. Among authors: jensen pa. Nat Commun. 2019 Dec 16;10(1):5729. doi: 10.1038/s41467-019-13719-9. Nat Commun. 2019. PMID: 31844066 Free PMC article.
Metabolic Modeling of Streptococcus mutans Reveals Complex Nutrient Requirements of an Oral Pathogen.
Jijakli K, Jensen PA. Jijakli K, et al. Among authors: jensen pa. mSystems. 2019 Oct 29;4(5):e00529-19. doi: 10.1128/mSystems.00529-19. mSystems. 2019. PMID: 31662430 Free PMC article.
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