Identification of a new subfamily of salt-tolerant esterases from a metagenomic library of tidal flat sediment

Appl Microbiol Biotechnol. 2012 Jan;93(2):623-31. doi: 10.1007/s00253-011-3433-x. Epub 2011 Jul 1.

Abstract

To search for novel lipolytic enzymes, a metagenomic library was constructed from the tidal flat sediment of Ganghwa Island in South Korea. By functional screening using tributyrin agar plates, 3 clones were selected from among the 80,050 clones of the fosmid library. The sequence analysis revealed that those clones contained different open reading frames, which showed 50-57% amino acid identity with putative lipolytic enzymes in the database. Based on the phylogenetic analysis, they were identified to encode novel members, which form a distinct and new subfamily in the family IV of bacterial lipolytic enzymes. The consensus sequence, GT(S)SA(G)G, encompassing the active site serine of the enzymes was different from the GDSAG motif, conserved in the other subfamily. The genes were expressed in Escherichia coli and recombinant proteins were purified as active soluble forms. The enzymes showed the highest activity toward p-nitrophenyl valerate (C5) and exhibited optimum activities at mesophilic temperature ranges and slightly alkaline pH. In particular, the enzymes displayed salt tolerance with over 50% of the maximum activity remained in the presence of 3 M NaCl (or KCl). In this study, we demonstrated that the metagenomic approach using marine tidal flat sediment as a DNA source expanded the diversity of lipolytic enzyme-encoding genes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Cluster Analysis
  • Enzyme Inhibitors / metabolism*
  • Enzyme Stability
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Esterases / chemistry
  • Esterases / genetics*
  • Esterases / isolation & purification
  • Esterases / metabolism*
  • Gene Expression
  • Gene Library
  • Geologic Sediments*
  • Hydrogen-Ion Concentration
  • Metagenome*
  • Molecular Sequence Data
  • Phylogeny
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / isolation & purification
  • Recombinant Proteins / metabolism
  • Republic of Korea
  • Salts / metabolism*
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid
  • Substrate Specificity
  • Temperature

Substances

  • Enzyme Inhibitors
  • Recombinant Proteins
  • Salts
  • Esterases

Associated data

  • GENBANK/GQ340931
  • GENBANK/GQ340932
  • GENBANK/GQ340933