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The Kappa platform for rule-based modeling.
Boutillier P, Maasha M, Li X, Medina-Abarca HF, Krivine J, Feret J, Cristescu I, Forbes AG, Fontana W. Boutillier P, et al. Among authors: feret j. Bioinformatics. 2018 Jul 1;34(13):i583-i592. doi: 10.1093/bioinformatics/bty272. Bioinformatics. 2018. PMID: 29950016 Free PMC article.
Internal coarse-graining of molecular systems.
Feret J, Danos V, Krivine J, Harmer R, Fontana W. Feret J, et al. Proc Natl Acad Sci U S A. 2009 Apr 21;106(16):6453-8. doi: 10.1073/pnas.0809908106. Epub 2009 Apr 3. Proc Natl Acad Sci U S A. 2009. PMID: 19346467 Free PMC article.