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Meta-QC-Chain: comprehensive and fast quality control method for metagenomic data.
Zhou Q, Su X, Jing G, Ning K. Zhou Q, et al. Among authors: jing g. Genomics Proteomics Bioinformatics. 2014 Feb;12(1):52-6. doi: 10.1016/j.gpb.2014.01.002. Epub 2014 Feb 4. Genomics Proteomics Bioinformatics. 2014. PMID: 24508279 Free PMC article.
GPU-Meta-Storms: computing the structure similarities among massive amount of microbial community samples using GPU.
Su X, Wang X, Jing G, Ning K. Su X, et al. Among authors: jing g. Bioinformatics. 2014 Apr 1;30(7):1031-3. doi: 10.1093/bioinformatics/btt736. Epub 2013 Dec 19. Bioinformatics. 2014. PMID: 24363375
Parallel-META 3: Comprehensive taxonomical and functional analysis platform for efficient comparison of microbial communities.
Jing G, Sun Z, Wang H, Gong Y, Huang S, Ning K, Xu J, Su X. Jing G, et al. Sci Rep. 2017 Jan 12;7:40371. doi: 10.1038/srep40371. Sci Rep. 2017. PMID: 28079128 Free PMC article.
RNA-QC-chain: comprehensive and fast quality control for RNA-Seq data.
Zhou Q, Su X, Jing G, Chen S, Ning K. Zhou Q, et al. Among authors: jing g. BMC Genomics. 2018 Feb 14;19(1):144. doi: 10.1186/s12864-018-4503-6. BMC Genomics. 2018. PMID: 29444661 Free PMC article.
Dynamic Meta-Storms enables comprehensive taxonomic and phylogenetic comparison of shotgun metagenomes at the species level.
Jing G, Zhang Y, Yang M, Liu L, Xu J, Su X. Jing G, et al. Bioinformatics. 2020 Apr 1;36(7):2308-2310. doi: 10.1093/bioinformatics/btz910. Bioinformatics. 2020. PMID: 31793979
Multiple-Disease Detection and Classification across Cohorts via Microbiome Search.
Su X, Jing G, Sun Z, Liu L, Xu Z, McDonald D, Wang Z, Wang H, Gonzalez A, Zhang Y, Huang S, Huttley G, Knight R, Xu J. Su X, et al. Among authors: jing g. mSystems. 2020 Mar 17;5(2):e00150-20. doi: 10.1128/mSystems.00150-20. mSystems. 2020. PMID: 32184368 Free PMC article.
Method development for cross-study microbiome data mining: Challenges and opportunities.
Su X, Jing G, Zhang Y, Wu S. Su X, et al. Among authors: jing g. Comput Struct Biotechnol J. 2020 Aug 1;18:2075-2080. doi: 10.1016/j.csbj.2020.07.020. eCollection 2020. Comput Struct Biotechnol J. 2020. PMID: 32802279 Free PMC article. Review.
Genome-wide identification of transcription factors and transcription-factor binding sites in oleaginous microalgae Nannochloropsis.
Hu J, Wang D, Li J, Jing G, Ning K, Xu J. Hu J, et al. Among authors: jing g. Sci Rep. 2014 Jun 26;4:5454. doi: 10.1038/srep05454. Sci Rep. 2014. PMID: 24965723 Free PMC article.
Identifying and Predicting Novelty in Microbiome Studies.
Su X, Jing G, McDonald D, Wang H, Wang Z, Gonzalez A, Sun Z, Huang S, Navas J, Knight R, Xu J. Su X, et al. Among authors: jing g. mBio. 2018 Nov 13;9(6):e02099-18. doi: 10.1128/mBio.02099-18. mBio. 2018. PMID: 30425147 Free PMC article.
Reply to Sun et al., "Identifying Composition Novelty in Microbiome Studies: Improvement of Prediction Accuracy".
Su X, Jing G, McDonald D, Wang H, Wang Z, Gonzalez A, Sun Z, Huang S, Navas J, Knight R, Xu J. Su X, et al. Among authors: jing g. mBio. 2019 Aug 6;10(4):e01234-19. doi: 10.1128/mBio.01234-19. mBio. 2019. PMID: 31387904 Free PMC article. No abstract available.
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