Johnson JM - Search Results

1

Definition, conservation and epigenetics of housekeeping and tissue-enriched genes.

She X, Rohl CA, Castle JC, Kulkarni AV, Johnson JM, Chen R. She X, et al. Among authors: johnson jm. BMC Genomics. 2009 Jun 17;10:269. doi: 10.1186/1471-2164-10-269. BMC Genomics. 2009. PMID: 19534766 Free PMC article.

2

DNA copy number, including telomeres and mitochondria, assayed using next-generation sequencing.

Castle JC, Biery M, Bouzek H, Xie T, Chen R, Misura K, Jackson S, Armour CD, Johnson JM, Rohl CA, Raymond CK. Castle JC, et al. Among authors: johnson jm. BMC Genomics. 2010 Apr 16;11:244. doi: 10.1186/1471-2164-11-244. BMC Genomics. 2010. PMID: 20398377 Free PMC article.

3

ACC2 is expressed at high levels in human white adipose and has an isoform with a novel N-terminus [corrected].

Castle JC, Hara Y, Raymond CK, Garrett-Engele P, Ohwaki K, Kan Z, Kusunoki J, Johnson JM. Castle JC, et al. Among authors: johnson jm. PLoS One. 2009;4(2):e4369. doi: 10.1371/journal.pone.0004369. Epub 2009 Feb 3. PLoS One. 2009. PMID: 19190759 Free PMC article.

4

Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments.

Johnson JM, Edwards S, Shoemaker D, Schadt EE. Johnson JM, et al. Trends Genet. 2005 Feb;21(2):93-102. doi: 10.1016/j.tig.2004.12.009. Trends Genet. 2005. PMID: 15661355 Review.

5

Evolutionarily conserved and diverged alternative splicing events show different expression and functional profiles.

Kan Z, Garrett-Engele PW, Johnson JM, Castle JC. Kan Z, et al. Among authors: johnson jm. Nucleic Acids Res. 2005 Sep 29;33(17):5659-66. doi: 10.1093/nar/gki834. Print 2005. Nucleic Acids Res. 2005. PMID: 16195578 Free PMC article.

6

Genetic validation of whole-transcriptome sequencing for mapping expression affected by cis-regulatory variation.

Babak T, Garrett-Engele P, Armour CD, Raymond CK, Keller MP, Chen R, Rohl CA, Johnson JM, Attie AD, Fraser HB, Schadt EE. Babak T, et al. Among authors: johnson jm. BMC Genomics. 2010 Aug 13;11:473. doi: 10.1186/1471-2164-11-473. BMC Genomics. 2010. PMID: 20707912 Free PMC article.

7

Digital transcriptome profiling using selective hexamer priming for cDNA synthesis.

Armour CD, Castle JC, Chen R, Babak T, Loerch P, Jackson S, Shah JK, Dey J, Rohl CA, Johnson JM, Raymond CK. Armour CD, et al. Among authors: johnson jm. Nat Methods. 2009 Sep;6(9):647-9. doi: 10.1038/nmeth.1360. Epub 2009 Aug 9. Nat Methods. 2009. PMID: 19668204

8

Global survey of genomic imprinting by transcriptome sequencing.

Babak T, Deveale B, Armour C, Raymond C, Cleary MA, van der Kooy D, Johnson JM, Lim LP. Babak T, et al. Among authors: johnson jm. Curr Biol. 2008 Nov 25;18(22):1735-41. doi: 10.1016/j.cub.2008.09.044. Curr Biol. 2008. PMID: 19026546 Free article.

9

Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines.

Castle JC, Zhang C, Shah JK, Kulkarni AV, Kalsotra A, Cooper TA, Johnson JM. Castle JC, et al. Among authors: johnson jm. Nat Genet. 2008 Dec;40(12):1416-25. doi: 10.1038/ng.264. Epub 2008 Nov 2. Nat Genet. 2008. PMID: 18978788 Free PMC article.

10

Mapping the genetic architecture of gene expression in human liver.

Schadt EE, Molony C, Chudin E, Hao K, Yang X, Lum PY, Kasarskis A, Zhang B, Wang S, Suver C, Zhu J, Millstein J, Sieberts S, Lamb J, GuhaThakurta D, Derry J, Storey JD, Avila-Campillo I, Kruger MJ, Johnson JM, Rohl CA, van Nas A, Mehrabian M, Drake TA, Lusis AJ, Smith RC, Guengerich FP, Strom SC, Schuetz E, Rushmore TH, Ulrich R. Schadt EE, et al. Among authors: johnson jm. PLoS Biol. 2008 May 6;6(5):e107. doi: 10.1371/journal.pbio.0060107. PLoS Biol. 2008. PMID: 18462017 Free PMC article.

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