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Sequence type analysis and recombinational tests (START).
Jolley KA, Feil EJ, Chan MS, Maiden MC. Jolley KA, et al. Bioinformatics. 2001 Dec;17(12):1230-1. doi: 10.1093/bioinformatics/17.12.1230. Bioinformatics. 2001. PMID: 11751234
mlstdbNet - distributed multi-locus sequence typing (MLST) databases.
Jolley KA, Chan MS, Maiden MC. Jolley KA, et al. BMC Bioinformatics. 2004 Jul 1;5:86. doi: 10.1186/1471-2105-5-86. BMC Bioinformatics. 2004. PMID: 15230973 Free PMC article.
AgdbNet - antigen sequence database software for bacterial typing.
Jolley KA, Maiden MC. Jolley KA, et al. BMC Bioinformatics. 2006 Jun 21;7:314. doi: 10.1186/1471-2105-7-314. BMC Bioinformatics. 2006. PMID: 16790057 Free PMC article.
Opacity-associated adhesin repertoire in hyperinvasive Neisseria meningitidis.
Callaghan MJ, Jolley KA, Maiden MC. Callaghan MJ, et al. Infect Immun. 2006 Sep;74(9):5085-94. doi: 10.1128/IAI.00293-06. Infect Immun. 2006. PMID: 16926400 Free PMC article.
Multilocus sequence typing for global surveillance of meningococcal disease.
Brehony C, Jolley KA, Maiden MC. Brehony C, et al. FEMS Microbiol Rev. 2007 Jan;31(1):15-26. doi: 10.1111/j.1574-6976.2006.00056.x. Epub 2006 Dec 1. FEMS Microbiol Rev. 2007. PMID: 17168997 Review.
Population structure of Streptococcus oralis.
Do T, Jolley KA, Maiden MCJ, Gilbert SC, Clark D, Wade WG, Beighton D. Do T, et al. Microbiology. 2009 Aug;155(Pt 8):2593-2602. doi: 10.1099/mic.0.027284-0. Epub 2009 May 7. Microbiology. 2009. PMID: 19423627 Free PMC article.
Long-term evolution of antigen repertoires among carried meningococci.
Buckee CO, Gupta S, Kriz P, Maiden MC, Jolley KA. Buckee CO, et al. Proc Biol Sci. 2010 Jun 7;277(1688):1635-41. doi: 10.1098/rspb.2009.2033. Epub 2010 Feb 3. Proc Biol Sci. 2010. PMID: 20129981 Free PMC article.
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