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Prediction of mammalian microRNA targets.
Lewis BP, Shih IH, Jones-Rhoades MW, Bartel DP, Burge CB. Lewis BP, et al. Among authors: jones rhoades mw. Cell. 2003 Dec 26;115(7):787-98. doi: 10.1016/s0092-8674(03)01018-3. Cell. 2003. PMID: 14697198 Free article.
MicroRNAS and their regulatory roles in plants.
Jones-Rhoades MW, Bartel DP, Bartel B. Jones-Rhoades MW, et al. Annu Rev Plant Biol. 2006;57:19-53. doi: 10.1146/annurev.arplant.57.032905.105218. Annu Rev Plant Biol. 2006. PMID: 16669754 Review.
Prediction of plant miRNA genes.
Jones-Rhoades MW. Jones-Rhoades MW. Methods Mol Biol. 2010;592:19-30. doi: 10.1007/978-1-60327-005-2_2. Methods Mol Biol. 2010. PMID: 19802586
Conservation and divergence in plant microRNAs.
Jones-Rhoades MW. Jones-Rhoades MW. Plant Mol Biol. 2012 Sep;80(1):3-16. doi: 10.1007/s11103-011-9829-2. Epub 2011 Oct 14. Plant Mol Biol. 2012. PMID: 21996939 Review.
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S, Déjardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S, Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J, Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B, Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M, Jorgensen R, Joshi C, Kangasjärvi J, Karlsson J, Kelleher C, Kirkpatrick R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leplé JC, Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR, Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G, Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouzé P, Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F, Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S, Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D. Tuskan GA, et al. Science. 2006 Sep 15;313(5793):1596-604. doi: 10.1126/science.1128691. Science. 2006. PMID: 16973872