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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2005 2
2006 2
2007 3
2008 2
2009 3
2011 1
2020 0
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11 results
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Erroneous attribution of relevant transcription factor binding sites despite successful prediction of cis-regulatory modules.
Halfon MS, Zhu Q, Brennan ER, Zhou Y. Halfon MS, et al. BMC Genomics. 2011 Nov 25;12:578. doi: 10.1186/1471-2164-12-578. BMC Genomics. 2011. PMID: 22115527 Free PMC article.
Large-scale analysis of transcriptional cis-regulatory modules reveals both common features and distinct subclasses.
Li L, Zhu Q, He X, Sinha S, Halfon MS. Li L, et al. Genome Biol. 2007;8(6):R101. doi: 10.1186/gb-2007-8-6-r101. Genome Biol. 2007. PMID: 17550599 Free PMC article.
REDfly 2.0: an integrated database of cis-regulatory modules and transcription factor binding sites in Drosophila.
Halfon MS, Gallo SM, Bergman CM. Halfon MS, et al. Nucleic Acids Res. 2008 Jan;36(Database issue):D594-8. doi: 10.1093/nar/gkm876. Epub 2007 Nov 26. Nucleic Acids Res. 2008. PMID: 18039705 Free PMC article.
An integrated strategy for analyzing the unique developmental programs of different myoblast subtypes.
Estrada B, Choe SE, Gisselbrecht SS, Michaud S, Raj L, Busser BW, Halfon MS, Church GM, Michelson AM. Estrada B, et al. PLoS Genet. 2006 Feb;2(2):e16. doi: 10.1371/journal.pgen.0020016. Epub 2006 Feb 17. PLoS Genet. 2006. PMID: 16482229 Free PMC article.
Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset.
Choe SE, Boutros M, Michelson AM, Church GM, Halfon MS. Choe SE, et al. Genome Biol. 2005;6(2):R16. doi: 10.1186/gb-2005-6-2-r16. Epub 2005 Jan 28. Genome Biol. 2005. PMID: 15693945 Free PMC article.
Bis(4-amino-3,5-di-2-pyridyl-4H-1,2,4-triazole)diaquanickel(II) bis(perchlorate).
Shao CF, Geng LC. Shao CF, et al. Acta Crystallogr Sect E Struct Rep Online. 2009 Apr 10;65(Pt 5):m511-2. doi: 10.1107/S1600536809012598. Acta Crystallogr Sect E Struct Rep Online. 2009. PMID: 21583758 Free PMC article.
Complex organizational structure of the genome revealed by genome-wide analysis of single and alternative promoters in Drosophila melanogaster.
Zhu Q, Halfon MS. Zhu Q, et al. BMC Genomics. 2009 Jan 7;10:9. doi: 10.1186/1471-2164-10-9. BMC Genomics. 2009. PMID: 19128496 Free PMC article.
Vector-dependent gene expression driven by insulated P-element reporter vectors.
Zhu Q, Halfon MS. Zhu Q, et al. Fly (Austin). 2007 Jan-Feb;1(1):55-6. doi: 10.4161/fly.3892. Epub 2007 Jan 23. Fly (Austin). 2007. PMID: 18690057
Identification of receptor-tyrosine-kinase-signaling target genes reveals receptor-specific activities and pathway branchpoints during Drosophila development.
Leatherbarrow JR, Halfon MS. Leatherbarrow JR, et al. Genetics. 2009 Apr;181(4):1335-45. doi: 10.1534/genetics.108.098475. Epub 2009 Feb 2. Genetics. 2009. PMID: 19189950 Free PMC article.
REDfly: a Regulatory Element Database for Drosophila.
Gallo SM, Li L, Hu Z, Halfon MS. Gallo SM, et al. Bioinformatics. 2006 Feb 1;22(3):381-3. doi: 10.1093/bioinformatics/bti794. Epub 2005 Nov 22. Bioinformatics. 2006. PMID: 16303794
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