Kalinina OV - Search Results

1

[Computational method for prediction of protein functional sites using specificity determinants].

Kalinina OV, Rassel RB, Rakhmaninova AB, Gel'fand MS. Kalinina OV, et al. Mol Biol (Mosk). 2007 Jan-Feb;41(1):151-62. Mol Biol (Mosk). 2007. PMID: 17380902 Russian.

2

Combining specificity determining and conserved residues improves functional site prediction.

Kalinina OV, Gelfand MS, Russell RB. Kalinina OV, et al. BMC Bioinformatics. 2009 Jun 9;10:174. doi: 10.1186/1471-2105-10-174. BMC Bioinformatics. 2009. PMID: 19508719 Free PMC article.

3

SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins.

Kalinina OV, Novichkov PS, Mironov AA, Gelfand MS, Rakhmaninova AB. Kalinina OV, et al. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W424-8. doi: 10.1093/nar/gkh391. Nucleic Acids Res. 2004. PMID: 15215423 Free PMC article.

4

Automated selection of positions determining functional specificity of proteins by comparative analysis of orthologous groups in protein families.

Kalinina OV, Mironov AA, Gelfand MS, Rakhmaninova AB. Kalinina OV, et al. Protein Sci. 2004 Feb;13(2):443-56. doi: 10.1110/ps.03191704. Protein Sci. 2004. PMID: 14739328 Free PMC article.

5

An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies.

Mazin PV, Gelfand MS, Mironov AA, Rakhmaninova AB, Rubinov AR, Russell RB, Kalinina OV. Mazin PV, et al. Among authors: kalinina ov. Algorithms Mol Biol. 2010 Jul 15;5:29. doi: 10.1186/1748-7188-5-29. Algorithms Mol Biol. 2010. PMID: 20633297 Free PMC article.

6

Amino acid residues that determine functional specificity of NADP- and NAD-dependent isocitrate and isopropylmalate dehydrogenases.

Kalinina OV, Gelfand MS. Kalinina OV, et al. Proteins. 2006 Sep 1;64(4):1001-9. doi: 10.1002/prot.21027. Proteins. 2006. PMID: 16767773

7

Patterns of amino acid conservation in human and animal immunodeficiency viruses.

Voitenko OS, Dhroso A, Feldmann A, Korkin D, Kalinina OV. Voitenko OS, et al. Among authors: kalinina ov. Bioinformatics. 2016 Sep 1;32(17):i685-i692. doi: 10.1093/bioinformatics/btw441. Bioinformatics. 2016. PMID: 27587690

8

Modelling binding between CCR5 and CXCR4 receptors and their ligands suggests the surface electrostatic potential of the co-receptor to be a key player in the HIV-1 tropism.

Kalinina OV, Pfeifer N, Lengauer T. Kalinina OV, et al. Retrovirology. 2013 Nov 11;10:130. doi: 10.1186/1742-4690-10-130. Retrovirology. 2013. PMID: 24215935 Free PMC article.

9

Detection of atypical genes in virus families using a one-class SVM.

Metzler S, Kalinina OV. Metzler S, et al. Among authors: kalinina ov. BMC Genomics. 2014 Oct 20;15(1):913. doi: 10.1186/1471-2164-15-913. BMC Genomics. 2014. PMID: 25336138 Free PMC article.

10

Combinations of protein-chemical complex structures reveal new targets for established drugs.

Kalinina OV, Wichmann O, Apic G, Russell RB. Kalinina OV, et al. PLoS Comput Biol. 2011 May;7(5):e1002043. doi: 10.1371/journal.pcbi.1002043. Epub 2011 May 5. PLoS Comput Biol. 2011. PMID: 21573205 Free PMC article.

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