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Genome-Wide Profiling of DNA Double-Strand Breaks by the BLESS and BLISS Methods.
Mirzazadeh R, Kallas T, Bienko M, Crosetto N. Mirzazadeh R, et al. Among authors: kallas t. Methods Mol Biol. 2018;1672:167-194. doi: 10.1007/978-1-4939-7306-4_14. Methods Mol Biol. 2018. PMID: 29043625
BLISS is a versatile and quantitative method for genome-wide profiling of DNA double-strand breaks.
Yan WX, Mirzazadeh R, Garnerone S, Scott D, Schneider MW, Kallas T, Custodio J, Wernersson E, Li Y, Gao L, Federova Y, Zetsche B, Zhang F, Bienko M, Crosetto N. Yan WX, et al. Among authors: kallas t. Nat Commun. 2017 May 12;8:15058. doi: 10.1038/ncomms15058. Nat Commun. 2017. PMID: 28497783 Free PMC article.
GPSeq reveals the radial organization of chromatin in the cell nucleus.
Girelli G, Custodio J, Kallas T, Agostini F, Wernersson E, Spanjaard B, Mota A, Kolbeinsdottir S, Gelali E, Crosetto N, Bienko M. Girelli G, et al. Among authors: kallas t. Nat Biotechnol. 2020 Oct;38(10):1184-1193. doi: 10.1038/s41587-020-0519-y. Epub 2020 May 25. Nat Biotechnol. 2020. PMID: 32451505
Interferon γ is a strong, STAT1-dependent direct inducer of BCL6 expression in multiple myeloma cells.
Ujvari D, Nagy N, Madapura HS, Kallas T, Kröhnke MCL, Stenke L, Klein E, Salamon D. Ujvari D, et al. Among authors: kallas t. Biochem Biophys Res Commun. 2018 Apr 6;498(3):502-508. doi: 10.1016/j.bbrc.2018.03.010. Epub 2018 Mar 3. Biochem Biophys Res Commun. 2018. PMID: 29510136
Interferon γ is a STAT1-dependent direct inducer of BCL6 expression in imatinib-treated chronic myeloid leukemia cells.
Madapura HS, Nagy N, Ujvari D, Kallas T, Kröhnke MCL, Amu S, Björkholm M, Stenke L, Mandal PK, McMurray JS, Keszei M, Westerberg LS, Cheng H, Xue F, Klein G, Klein E, Salamon D. Madapura HS, et al. Among authors: kallas t. Oncogene. 2017 Aug 10;36(32):4619-4628. doi: 10.1038/onc.2017.85. Epub 2017 Apr 3. Oncogene. 2017. PMID: 28368400
Editorial: Cyanobacteria: The Green E. coli.
Ruffing AM, Kallas T. Ruffing AM, et al. Among authors: kallas t. Front Bioeng Biotechnol. 2016 Feb 2;4:7. doi: 10.3389/fbioe.2016.00007. eCollection 2016. Front Bioeng Biotechnol. 2016. PMID: 26870727 Free PMC article. No abstract available.
Deeply branching c6-like cytochromes of cyanobacteria.
Bialek W, Nelson M, Tamiola K, Kallas T, Szczepaniak A. Bialek W, et al. Among authors: kallas t. Biochemistry. 2008 May 20;47(20):5515-22. doi: 10.1021/bi701973g. Epub 2008 Apr 26. Biochemistry. 2008. PMID: 18439023
Whole-genome expression profiling of the marine diatom Thalassiosira pseudonana identifies genes involved in silicon bioprocesses.
Mock T, Samanta MP, Iverson V, Berthiaume C, Robison M, Holtermann K, Durkin C, Bondurant SS, Richmond K, Rodesch M, Kallas T, Huttlin EL, Cerrina F, Sussman MR, Armbrust EV. Mock T, et al. Among authors: kallas t. Proc Natl Acad Sci U S A. 2008 Feb 5;105(5):1579-84. doi: 10.1073/pnas.0707946105. Epub 2008 Jan 22. Proc Natl Acad Sci U S A. 2008. PMID: 18212125 Free PMC article.
Iron-sulfur cluster reconstitution of spinach chloroplast Rieske protein requires a partially prefolded apoprotein.
Gubernator B, Króliczewski J, Kallas T, Szczepaniak A. Gubernator B, et al. Among authors: kallas t. Biochim Biophys Acta. 2006 Apr;1764(4):735-42. doi: 10.1016/j.bbapap.2005.12.013. Epub 2006 Jan 10. Biochim Biophys Acta. 2006. PMID: 16458619
Cytochrome b6 arginine 214 of Synechococcus sp. PCC 7002, a key residue for quinone-reductase site function and turnover of the cytochrome bf complex.
Nelson ME, Finazzi G, Wang QJ, Middleton-Zarka KA, Whitmarsh J, Kallas T. Nelson ME, et al. Among authors: kallas t. J Biol Chem. 2005 Mar 18;280(11):10395-402. doi: 10.1074/jbc.M410948200. Epub 2005 Jan 4. J Biol Chem. 2005. PMID: 15632120 Free article.
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