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64 results

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Page 1
Sustainable data analysis with Snakemake.
Mölder F, Jablonski KP, Letcher B, Hall MB, van Dyken PC, Tomkins-Tinch CH, Sochat V, Forster J, Vieira FG, Meesters C, Lee S, Twardziok SO, Kanitz A, VanCampen J, Malladi V, Wilm A, Holtgrewe M, Rahmann S, Nahnsen S, Köster J. Mölder F, et al. Among authors: kanitz a. F1000Res. 2021 Jan 18;10:33. doi: 10.12688/f1000research.29032.3. eCollection 2021. F1000Res. 2021. PMID: 34035898 Free PMC article.
Managing workflow executions with WESkit.
Schneider-Lunitz V, Kensche PR, Kraatz L, Strubel P, Borufka S, Parala G, Kanitz A, Eils R, Buchhalter I, Twardziok SO. Schneider-Lunitz V, et al. Among authors: kanitz a. Bioinformatics. 2026 Feb 28;42(3):btag091. doi: 10.1093/bioinformatics/btag091. Bioinformatics. 2026. PMID: 41734277 Free PMC article.
MiR-CLIP reveals iso-miR selective regulation in the miR-124 targetome.
Wang Y, Soneson C, Malinowska AL, Laski A, Ghosh S, Kanitz A, Gebert LFR, Robinson MD, Hall J. Wang Y, et al. Among authors: kanitz a. Nucleic Acids Res. 2021 Jan 11;49(1):25-37. doi: 10.1093/nar/gkaa1117. Nucleic Acids Res. 2021. PMID: 33300035 Free PMC article.
Recording provenance of workflow runs with RO-Crate.
Leo S, Crusoe MR, Rodríguez-Navas L, Sirvent R, Kanitz A, De Geest P, Wittner R, Pireddu L, Garijo D, Fernández JM, Colonnelli I, Gallo M, Ohta T, Suetake H, Capella-Gutierrez S, de Wit R, Kinoshita BP, Soiland-Reyes S. Leo S, et al. Among authors: kanitz a. PLoS One. 2024 Sep 10;19(9):e0309210. doi: 10.1371/journal.pone.0309210. eCollection 2024. PLoS One. 2024. PMID: 39255315 Free PMC article.
Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data.
Bryce-Smith S, Burri D, Gazzara MR, Herrmann CJ, Danecka W, Fitzsimmons CM, Wan YK, Zhuang F, Fansler MM, Fernández JM, Ferret M, Gonzalez-Uriarte A, Haynes S, Herdman C, Kanitz A, Katsantoni M, Marini F, McDonnel E, Nicolet B, Poon CL, Rot G, Schärfen L, Wu PJ, Yoon Y, Barash Y, Zavolan M. Bryce-Smith S, et al. Among authors: kanitz a. RNA. 2023 Dec;29(12):1839-1855. doi: 10.1261/rna.079849.123. Epub 2023 Oct 10. RNA. 2023. PMID: 37816550 Free PMC article. Review.
64 results