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Page 1
Open-ST: High-resolution spatial transcriptomics in 3D.
Schott M, León-Periñán D, Splendiani E, Strenger L, Licha JR, Pentimalli TM, Schallenberg S, Alles J, Samut Tagliaferro S, Boltengagen A, Ehrig S, Abbiati S, Dommerich S, Pagani M, Ferretti E, Macino G, Karaiskos N, Rajewsky N. Schott M, et al. Among authors: karaiskos n. Cell. 2024 Jul 25;187(15):3953-3972.e26. doi: 10.1016/j.cell.2024.05.055. Epub 2024 Jun 24. Cell. 2024. PMID: 38917789 Free article.
Single-cell transcriptomics reveals common epithelial response patterns in human acute kidney injury.
Hinze C, Kocks C, Leiz J, Karaiskos N, Boltengagen A, Cao S, Skopnik CM, Klocke J, Hardenberg JH, Stockmann H, Gotthardt I, Obermayer B, Haghverdi L, Wyler E, Landthaler M, Bachmann S, Hocke AC, Corman V, Busch J, Schneider W, Himmerkus N, Bleich M, Eckardt KU, Enghard P, Rajewsky N, Schmidt-Ott KM. Hinze C, et al. Among authors: karaiskos n. Genome Med. 2022 Sep 9;14(1):103. doi: 10.1186/s13073-022-01108-9. Genome Med. 2022. PMID: 36085050 Free PMC article.
Combining spatial transcriptomics and ECM imaging in 3D for mapping cellular interactions in the tumor microenvironment.
Pentimalli TM, Schallenberg S, León-Periñán D, Legnini I, Theurillat I, Thomas G, Boltengagen A, Fritzsche S, Nimo J, Ruff L, Dernbach G, Jurmeister P, Murphy S, Gregory MT, Liang Y, Cordenonsi M, Piccolo S, Coscia F, Woehler A, Karaiskos N, Klauschen F, Rajewsky N. Pentimalli TM, et al. Among authors: karaiskos n. Cell Syst. 2025 May 21;16(5):101261. doi: 10.1016/j.cels.2025.101261. Epub 2025 Apr 11. Cell Syst. 2025. PMID: 40220761 Free article.
Interleukin-12 signaling drives Alzheimer's disease pathology through disrupting neuronal and oligodendrocyte homeostasis.
Schneeberger S, Kim SJ, Geesdorf MN, Friebel E, Eede P, Jendrach M, Boltengagen A, Braeuning C, Ruhwedel T, Hülsmeier AJ, Gimber N, Foerster M, Obst J, Andreadou M, Mundt S, Schmoranzer J, Prokop S, Kessler W, Kuhlmann T, Möbius W, Nave KA, Hornemann T, Becher B, Edgar JM, Karaiskos N, Kocks C, Rajewsky N, Heppner FL. Schneeberger S, et al. Among authors: karaiskos n. Nat Aging. 2025 Apr;5(4):622-641. doi: 10.1038/s43587-025-00816-2. Epub 2025 Mar 13. Nat Aging. 2025. PMID: 40082619 Free PMC article.
Gene expression cartography.
Nitzan M, Karaiskos N, Friedman N, Rajewsky N. Nitzan M, et al. Among authors: karaiskos n. Nature. 2019 Dec;576(7785):132-137. doi: 10.1038/s41586-019-1773-3. Epub 2019 Nov 20. Nature. 2019. PMID: 31748748
Protocol for high-resolution 3D spatial transcriptomics using Open-ST.
Schott M, León-Periñán D, Splendiani E, Ferretti E, Macino G, Karaiskos N, Rajewsky N. Schott M, et al. Among authors: karaiskos n. STAR Protoc. 2025 Mar 21;6(1):103521. doi: 10.1016/j.xpro.2024.103521. Epub 2024 Dec 19. STAR Protoc. 2025. PMID: 39708325 Free PMC article.
miRNA regulation in brain tissue space: the 3'UTR perspective.
Aigner D, Bartsch F, Bhaskar P, Emmenegger L, Karaiskos N, Rajewsky N, Rybak-Wolf A. Aigner D, et al. Among authors: karaiskos n. RNA. 2026 Mar 16;32(4):472-488. doi: 10.1261/rna.080850.125. RNA. 2026. PMID: 41672779 Free PMC article. Review.
The Drosophila embryo at single-cell transcriptome resolution.
Karaiskos N, Wahle P, Alles J, Boltengagen A, Ayoub S, Kipar C, Kocks C, Rajewsky N, Zinzen RP. Karaiskos N, et al. Science. 2017 Oct 13;358(6360):194-199. doi: 10.1126/science.aan3235. Epub 2017 Aug 31. Science. 2017. PMID: 28860209
36 results