Karimi MM - Search Results

1

H3S10ph broadly marks early-replicating domains in interphase ESCs and shows reciprocal antagonism with H3K9me2.

Chen CCL, Goyal P, Karimi MM, Abildgaard MH, Kimura H, Lorincz MC. Chen CCL, et al. Among authors: karimi mm. Genome Res. 2018 Jan;28(1):37-51. doi: 10.1101/gr.224717.117. Epub 2017 Dec 11. Genome Res. 2018. PMID: 29229671 Free PMC article.

2

DNA methylation and SETDB1/H3K9me3 regulate predominantly distinct sets of genes, retroelements, and chimeric transcripts in mESCs.

Karimi MM, Goyal P, Maksakova IA, Bilenky M, Leung D, Tang JX, Shinkai Y, Mager DL, Jones S, Hirst M, Lorincz MC. Karimi MM, et al. Cell Stem Cell. 2011 Jun 3;8(6):676-87. doi: 10.1016/j.stem.2011.04.004. Cell Stem Cell. 2011. PMID: 21624812 Free PMC article.

3

Retrotransposon-induced heterochromatin spreading in the mouse revealed by insertional polymorphisms.

Rebollo R, Karimi MM, Bilenky M, Gagnier L, Miceli-Royer K, Zhang Y, Goyal P, Keane TM, Jones S, Hirst M, Lorincz MC, Mager DL. Rebollo R, et al. Among authors: karimi mm. PLoS Genet. 2011 Sep;7(9):e1002301. doi: 10.1371/journal.pgen.1002301. Epub 2011 Sep 29. PLoS Genet. 2011. PMID: 21980304 Free PMC article.

4

Distinct roles of KAP1, HP1 and G9a/GLP in silencing of the two-cell-specific retrotransposon MERVL in mouse ES cells.

Maksakova IA, Thompson PJ, Goyal P, Jones SJ, Singh PB, Karimi MM, Lorincz MC. Maksakova IA, et al. Among authors: karimi mm. Epigenetics Chromatin. 2013 Jun 4;6(1):15. doi: 10.1186/1756-8935-6-15. Epigenetics Chromatin. 2013. PMID: 23735015 Free PMC article.

5

Setdb1 is required for germline development and silencing of H3K9me3-marked endogenous retroviruses in primordial germ cells.

Liu S, Brind'Amour J, Karimi MM, Shirane K, Bogutz A, Lefebvre L, Sasaki H, Shinkai Y, Lorincz MC. Liu S, et al. Among authors: karimi mm. Genes Dev. 2014 Sep 15;28(18):2041-55. doi: 10.1101/gad.244848.114. Genes Dev. 2014. PMID: 25228647 Free PMC article.

6

An ultra-low-input native ChIP-seq protocol for genome-wide profiling of rare cell populations.

Brind'Amour J, Liu S, Hudson M, Chen C, Karimi MM, Lorincz MC. Brind'Amour J, et al. Among authors: karimi mm. Nat Commun. 2015 Jan 21;6:6033. doi: 10.1038/ncomms7033. Nat Commun. 2015. PMID: 25607992 Free article.

7

hnRNP K coordinates transcriptional silencing by SETDB1 in embryonic stem cells.

Thompson PJ, Dulberg V, Moon KM, Foster LJ, Chen C, Karimi MM, Lorincz MC. Thompson PJ, et al. Among authors: karimi mm. PLoS Genet. 2015 Jan 22;11(1):e1004933. doi: 10.1371/journal.pgen.1004933. eCollection 2015 Jan. PLoS Genet. 2015. PMID: 25611934 Free PMC article.

8

Activation of Endogenous Retroviruses in Dnmt1(-/-) ESCs Involves Disruption of SETDB1-Mediated Repression by NP95 Binding to Hemimethylated DNA.

Sharif J, Endo TA, Nakayama M, Karimi MM, Shimada M, Katsuyama K, Goyal P, Brind'Amour J, Sun MA, Sun Z, Ishikura T, Mizutani-Koseki Y, Ohara O, Shinkai Y, Nakanishi M, Xie H, Lorincz MC, Koseki H. Sharif J, et al. Among authors: karimi mm. Cell Stem Cell. 2016 Jul 7;19(1):81-94. doi: 10.1016/j.stem.2016.03.013. Epub 2016 Apr 14. Cell Stem Cell. 2016. PMID: 27151458 Free article.

9

ChAsE: chromatin analysis and exploration tool.

Younesy H, Nielsen CB, Lorincz MC, Jones SJ, Karimi MM, Möller T. Younesy H, et al. Among authors: karimi mm. Bioinformatics. 2016 Nov 1;32(21):3324-3326. doi: 10.1093/bioinformatics/btw382. Epub 2016 Jul 4. Bioinformatics. 2016. PMID: 27378294 Free PMC article.

10

Development and application of an integrated allele-specific pipeline for methylomic and epigenomic analysis (MEA).

Richard Albert J, Koike T, Younesy H, Thompson R, Bogutz AB, Karimi MM, Lorincz MC. Richard Albert J, et al. Among authors: karimi mm. BMC Genomics. 2018 Jun 15;19(1):463. doi: 10.1186/s12864-018-4835-2. BMC Genomics. 2018. PMID: 29907088 Free PMC article.

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