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Page 1
Topology prediction of insect olfactory receptors.
Tiwari V, Karpe SD, Sowdhamini R. Tiwari V, et al. Among authors: karpe sd. Curr Opin Struct Biol. 2019 Apr;55:194-203. doi: 10.1016/j.sbi.2019.05.014. Epub 2019 Jun 22. Curr Opin Struct Biol. 2019. PMID: 31233963 Review.
Exploring the medicinally important secondary metabolites landscape through the lens of transcriptome data in fenugreek (Trigonella foenum graecum L.).
Naika MBN, Sathyanarayanan N, Sajeevan RS, Bhattacharyya T, Ghosh P, Iyer MS, Jarjapu M, Joshi AG, Harini K, Shafi KM, Kalmankar N, Karpe SD, Mam B, Pasha SN, Sowdhamini R. Naika MBN, et al. Among authors: karpe sd. Sci Rep. 2022 Aug 8;12(1):13534. doi: 10.1038/s41598-022-17779-8. Sci Rep. 2022. PMID: 35941189 Free PMC article.
Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties.
Upadhyay AK, Chacko AR, Gandhimathi A, Ghosh P, Harini K, Joseph AP, Joshi AG, Karpe SD, Kaushik S, Kuravadi N, Lingu CS, Mahita J, Malarini R, Malhotra S, Malini M, Mathew OK, Mutt E, Naika M, Nitish S, Pasha SN, Raghavender US, Rajamani A, Shilpa S, Shingate PN, Singh HR, Sukhwal A, Sunitha MS, Sumathi M, Ramaswamy S, Gowda M, Sowdhamini R. Upadhyay AK, et al. Among authors: karpe sd. BMC Plant Biol. 2015 Aug 28;15:212. doi: 10.1186/s12870-015-0562-x. BMC Plant Biol. 2015. PMID: 26315624 Free PMC article.
The transcriptome enables the identification of candidate genes behind medicinal value of Drumstick tree (Moringa oleifera).
Pasha SN, Shafi KM, Joshi AG, Meenakshi I, Harini K, Mahita J, Sajeevan RS, Karpe SD, Ghosh P, Nitish S, Gandhimathi A, Mathew OK, Prasanna SH, Malini M, Mutt E, Naika M, Ravooru N, Rao RM, Shingate PN, Sukhwal A, Sunitha MS, Upadhyay AK, Vinekar RS, Sowdhamini R. Pasha SN, et al. Among authors: karpe sd. Genomics. 2020 Jan;112(1):621-628. doi: 10.1016/j.ygeno.2019.04.014. Epub 2019 Apr 29. Genomics. 2020. PMID: 31048014 Free article.
DOR - a Database of Olfactory Receptors - Integrated Repository for Sequence and Secondary Structural Information of Olfactory Receptors in Selected Eukaryotic Genomes.
Nagarathnam B, Karpe SD, Harini K, Sankar K, Iftekhar M, Rajesh D, Giji S, Archunan G, Balakrishnan V, Gromiha MM, Nemoto W, Fukui K, Sowdhamini R. Nagarathnam B, et al. Among authors: karpe sd. Bioinform Biol Insights. 2014 Jun 12;8:147-58. doi: 10.4137/BBI.S14858. eCollection 2014. Bioinform Biol Insights. 2014. PMID: 25002814 Free PMC article.
A knowledge-driven protocol for prediction of proteins of interest with an emphasis on biosynthetic pathways.
Joshi AG, Harini K, Meenakshi I, Shafi KM, Pasha SN, Mahita J, Sajeevan RS, Karpe SD, Ghosh P, Nitish S, Gandhimathi A, Mathew OK, Prasanna SH, Malini M, Mutt E, Naika M, Ravooru N, Rao RM, Shingate PN, Sukhwal A, Sunitha MS, Upadhyay AK, Vinekar RS, Sowdhamini R. Joshi AG, et al. Among authors: karpe sd. MethodsX. 2020 Sep 2;7:101053. doi: 10.1016/j.mex.2020.101053. eCollection 2020. MethodsX. 2020. PMID: 33024710 Free PMC article.
Dataset for the combined transcriptome assembly of M. oleifera and functional annotation.
Shafi KM, Joshi AG, Meenakshi I, Pasha SN, Harini K, Mahita J, Sajeevan RS, Karpe SD, Ghosh P, Nitish S, Gandhimathi A, Mathew OK, Prasanna SH, Malini M, Mutt E, Naika M, Ravooru N, Rao RM, Shingate PN, Sukhwal A, Sunitha MS, Upadhyay AK, Vinekar RS, Sowdhamini R. Shafi KM, et al. Among authors: karpe sd. Data Brief. 2020 Mar 20;30:105416. doi: 10.1016/j.dib.2020.105416. eCollection 2020 Jun. Data Brief. 2020. PMID: 32309524 Free PMC article.