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43 results
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Cerebellar output in zebrafish: an analysis of spatial patterns and topography in eurydendroid cell projections.
Heap LA, Goh CC, Kassahn KS, Scott EK. Heap LA, et al. Among authors: kassahn ks. Front Neural Circuits. 2013 Apr 1;7:53. doi: 10.3389/fncir.2013.00053. eCollection 2013. Front Neural Circuits. 2013. PMID: 23554587 Free PMC article.
The mammalian PYHIN gene family: phylogeny, evolution and expression.
Cridland JA, Curley EZ, Wykes MN, Schroder K, Sweet MJ, Roberts TL, Ragan MA, Kassahn KS, Stacey KJ. Cridland JA, et al. Among authors: kassahn ks. BMC Evol Biol. 2012 Aug 7;12:140. doi: 10.1186/1471-2148-12-140. BMC Evol Biol. 2012. PMID: 22871040 Free PMC article.
A visual framework for sequence analysis using n-grams and spectral rearrangement.
Maetschke SR, Kassahn KS, Dunn JA, Han SP, Curley EZ, Stacey KJ, Ragan MA. Maetschke SR, et al. Among authors: kassahn ks. Bioinformatics. 2010 Mar 15;26(6):737-44. doi: 10.1093/bioinformatics/btq042. Epub 2010 Feb 3. Bioinformatics. 2010. PMID: 20130028
Genome-wide DNA methylation patterns in pancreatic ductal adenocarcinoma reveal epigenetic deregulation of SLIT-ROBO, ITGA2 and MET signaling.
Nones K, Waddell N, Song S, Patch AM, Miller D, Johns A, Wu J, Kassahn KS, Wood D, Bailey P, Fink L, Manning S, Christ AN, Nourse C, Kazakoff S, Taylor D, Leonard C, Chang DK, Jones MD, Thomas M, Watson C, Pinese M, Cowley M, Rooman I, Pajic M; APGI, Butturini G, Malpaga A, Corbo V, Crippa S, Falconi M, Zamboni G, Castelli P, Lawlor RT, Gill AJ, Scarpa A, Pearson JV, Biankin AV, Grimmond SM. Nones K, et al. Among authors: kassahn ks. Int J Cancer. 2014 Sep 1;135(5):1110-8. doi: 10.1002/ijc.28765. Epub 2014 May 9. Int J Cancer. 2014. PMID: 24500968
Deep-transcriptome and ribonome sequencing redefines the molecular networks of pluripotency and the extracellular space in human embryonic stem cells.
Kolle G, Shepherd JL, Gardiner B, Kassahn KS, Cloonan N, Wood DL, Nourbakhsh E, Taylor DF, Wani S, Chy HS, Zhou Q, McKernan K, Kuersten S, Laslett AL, Grimmond SM. Kolle G, et al. Among authors: kassahn ks. Genome Res. 2011 Dec;21(12):2014-25. doi: 10.1101/gr.119321.110. Epub 2011 Oct 31. Genome Res. 2011. PMID: 22042643 Free PMC article.
Somatic point mutation calling in low cellularity tumors.
Kassahn KS, Holmes O, Nones K, Patch AM, Miller DK, Christ AN, Harliwong I, Bruxner TJ, Xu Q, Anderson M, Wood S, Leonard C, Taylor D, Newell F, Song S, Idrisoglu S, Nourse C, Nourbakhsh E, Manning S, Wani S, Steptoe A, Pajic M, Cowley MJ, Pinese M, Chang DK, Gill AJ, Johns AL, Wu J, Wilson PJ, Fink L, Biankin AV, Waddell N, Grimmond SM, Pearson JV. Kassahn KS, et al. PLoS One. 2013 Nov 8;8(11):e74380. doi: 10.1371/journal.pone.0074380. eCollection 2013. PLoS One. 2013. PMID: 24250782 Free PMC article.
Evolution of gene function and regulatory control after whole-genome duplication: comparative analyses in vertebrates.
Kassahn KS, Dang VT, Wilkins SJ, Perkins AC, Ragan MA. Kassahn KS, et al. Genome Res. 2009 Aug;19(8):1404-18. doi: 10.1101/gr.086827.108. Epub 2009 May 13. Genome Res. 2009. PMID: 19439512 Free PMC article.
From transcriptome to biological function: environmental stress in an ectothermic vertebrate, the coral reef fish Pomacentrus moluccensis.
Kassahn KS, Crozier RH, Ward AC, Stone G, Caley MJ. Kassahn KS, et al. BMC Genomics. 2007 Oct 5;8:358. doi: 10.1186/1471-2164-8-358. BMC Genomics. 2007. PMID: 17916261 Free PMC article.
Mineralocorticoid receptors: evolutionary and pathophysiological considerations.
Kassahn KS, Ragan MA, Funder JW. Kassahn KS, et al. Endocrinology. 2011 May;152(5):1883-90. doi: 10.1210/en.2010-1444. Epub 2011 Feb 22. Endocrinology. 2011. PMID: 21343255
A workflow to increase verification rate of chromosomal structural rearrangements using high-throughput next-generation sequencing.
Quek K, Nones K, Patch AM, Fink JL, Newell F, Cloonan N, Miller D, Fadlullah MZ, Kassahn K, Christ AN, Bruxner TJ, Manning S, Harliwong I, Idrisoglu S, Nourse C, Nourbakhsh E, Wani S, Steptoe A, Anderson M, Holmes O, Leonard C, Taylor D, Wood S, Xu Q; Australian Pancreatic Cancer Genome Initiative, Wilson P, Biankin AV, Pearson JV, Waddell N, Grimmond SM. Quek K, et al. Biotechniques. 2014 Jul 1;57(1):31-8. doi: 10.2144/000114189. eCollection 2014 Jul. Biotechniques. 2014. PMID: 25005691
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