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Gateways to the FANTOM5 promoter level mammalian expression atlas.
Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F, Ishikawa-Kato S, Mungall CJ, Arner E, Baillie JK, Bertin N, Bono H, de Hoon M, Diehl AD, Dimont E, Freeman TC, Fujieda K, Hide W, Kaliyaperumal R, Katayama T, Lassmann T, Meehan TF, Nishikata K, Ono H, Rehli M, Sandelin A, Schultes EA, 't Hoen PA, Tatum Z, Thompson M, Toyoda T, Wright DW, Daub CO, Itoh M, Carninci P, Hayashizaki Y, Forrest AR, Kawaji H; FANTOM consortium. Lizio M, et al. Among authors: kasukawa t, t hoen pa. Genome Biol. 2015 Jan 5;16(1):22. doi: 10.1186/s13059-014-0560-6. Genome Biol. 2015. PMID: 25723102 Free PMC article.
READ: RIKEN Expression Array Database.
Bono H, Kasukawa T, Hayashizaki Y, Okazaki Y. Bono H, et al. Among authors: kasukawa t. Nucleic Acids Res. 2002 Jan 1;30(1):211-3. doi: 10.1093/nar/30.1.211. Nucleic Acids Res. 2002. PMID: 11752296 Free PMC article.
Systematic expression profiling of the mouse transcriptome using RIKEN cDNA microarrays.
Bono H, Yagi K, Kasukawa T, Nikaido I, Tominaga N, Miki R, Mizuno Y, Tomaru Y, Goto H, Nitanda H, Shimizu D, Makino H, Morita T, Fujiyama J, Sakai T, Shimoji T, Hume DA, Hayashizaki Y, Okazaki Y; RIKEN GER Group; GSL Members. Bono H, et al. Among authors: kasukawa t. Genome Res. 2003 Jun;13(6B):1318-23. doi: 10.1101/gr.1075103. Genome Res. 2003. PMID: 12819129 Free PMC article.
CDS annotation in full-length cDNA sequence.
Furuno M, Kasukawa T, Saito R, Adachi J, Suzuki H, Baldarelli R, Hayashizaki Y, Okazaki Y. Furuno M, et al. Among authors: kasukawa t. Genome Res. 2003 Jun;13(6B):1478-87. doi: 10.1101/gr.1060303. Genome Res. 2003. PMID: 12819146 Free PMC article.
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage.
Shiraki T, Kondo S, Katayama S, Waki K, Kasukawa T, Kawaji H, Kodzius R, Watahiki A, Nakamura M, Arakawa T, Fukuda S, Sasaki D, Podhajska A, Harbers M, Kawai J, Carninci P, Hayashizaki Y. Shiraki T, et al. Among authors: kasukawa t. Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15776-81. doi: 10.1073/pnas.2136655100. Epub 2003 Dec 8. Proc Natl Acad Sci U S A. 2003. PMID: 14663149 Free PMC article.
FREP: a database of functional repeats in mouse cDNAs.
Nagashima T, Matsuda H, Silva DG, Petrovsky N, Konagaya A, Schönbach C, Kasukawa T, Arakawa T, Carninci P, Kawai J, Hayashizaki Y; RIKEN GER Group; Genome Science Laoratory Members. Nagashima T, et al. Among authors: kasukawa t. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D471-5. doi: 10.1093/nar/gkh123. Nucleic Acids Res. 2004. PMID: 14681460 Free PMC article.
106 results