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MAFFT version 5: improvement in accuracy of multiple sequence alignment.
Katoh K, Kuma K, Toh H, Miyata T. Katoh K, et al. Nucleic Acids Res. 2005 Jan 20;33(2):511-8. doi: 10.1093/nar/gki198. Print 2005. Nucleic Acids Res. 2005. PMID: 15661851 Free PMC article.
MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences.
Thompson JD, Holbrook SR, Katoh K, Koehl P, Moras D, Westhof E, Poch O. Thompson JD, et al. Among authors: katoh k. Nucleic Acids Res. 2005 Jul 25;33(13):4164-71. doi: 10.1093/nar/gki735. Print 2005. Nucleic Acids Res. 2005. PMID: 16043635 Free PMC article.
Recent developments in the MAFFT multiple sequence alignment program.
Katoh K, Toh H. Katoh K, et al. Brief Bioinform. 2008 Jul;9(4):286-98. doi: 10.1093/bib/bbn013. Epub 2008 Mar 27. Brief Bioinform. 2008. PMID: 18372315
Protein multiple sequence alignment.
Do CB, Katoh K. Do CB, et al. Among authors: katoh k. Methods Mol Biol. 2008;484:379-413. doi: 10.1007/978-1-59745-398-1_25. Methods Mol Biol. 2008. PMID: 18592193 Review.
Multiple alignment of DNA sequences with MAFFT.
Katoh K, Asimenos G, Toh H. Katoh K, et al. Methods Mol Biol. 2009;537:39-64. doi: 10.1007/978-1-59745-251-9_3. Methods Mol Biol. 2009. PMID: 19378139
Parallelization of the MAFFT multiple sequence alignment program.
Katoh K, Toh H. Katoh K, et al. Bioinformatics. 2010 Aug 1;26(15):1899-900. doi: 10.1093/bioinformatics/btq224. Epub 2010 Apr 28. Bioinformatics. 2010. PMID: 20427515 Free PMC article.
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