Katoh K - Search Results

1

Adding unaligned sequences into an existing alignment using MAFFT and LAST.

Katoh K, Frith MC. Katoh K, et al. Bioinformatics. 2012 Dec 1;28(23):3144-6. doi: 10.1093/bioinformatics/bts578. Epub 2012 Sep 27. Bioinformatics. 2012. PMID: 23023983 Free PMC article.

2

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.

Katoh K, Misawa K, Kuma K, Miyata T. Katoh K, et al. Nucleic Acids Res. 2002 Jul 15;30(14):3059-66. doi: 10.1093/nar/gkf436. Nucleic Acids Res. 2002. PMID: 12136088 Free PMC article.

3

MAFFT version 5: improvement in accuracy of multiple sequence alignment.

Katoh K, Kuma K, Toh H, Miyata T. Katoh K, et al. Nucleic Acids Res. 2005 Jan 20;33(2):511-8. doi: 10.1093/nar/gki198. Print 2005. Nucleic Acids Res. 2005. PMID: 15661851 Free PMC article.

4

Improvement in the accuracy of multiple sequence alignment program MAFFT.

Katoh K, Kuma K, Miyata T, Toh H. Katoh K, et al. Genome Inform. 2005;16(1):22-33. Genome Inform. 2005. PMID: 16362903

5

PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences.

Katoh K, Toh H. Katoh K, et al. Bioinformatics. 2007 Feb 1;23(3):372-4. doi: 10.1093/bioinformatics/btl592. Epub 2006 Nov 21. Bioinformatics. 2007. PMID: 17118958

6

Recent developments in the MAFFT multiple sequence alignment program.

Katoh K, Toh H. Katoh K, et al. Brief Bioinform. 2008 Jul;9(4):286-98. doi: 10.1093/bib/bbn013. Epub 2008 Mar 27. Brief Bioinform. 2008. PMID: 18372315

7

Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework.

Katoh K, Toh H. Katoh K, et al. BMC Bioinformatics. 2008 Apr 25;9:212. doi: 10.1186/1471-2105-9-212. BMC Bioinformatics. 2008. PMID: 18439255 Free PMC article.

8

Protein multiple sequence alignment.

Do CB, Katoh K. Do CB, et al. Among authors: katoh k. Methods Mol Biol. 2008;484:379-413. doi: 10.1007/978-1-59745-398-1_25. Methods Mol Biol. 2008. PMID: 18592193 Review.

9

Multiple alignment of DNA sequences with MAFFT.

Katoh K, Asimenos G, Toh H. Katoh K, et al. Methods Mol Biol. 2009;537:39-64. doi: 10.1007/978-1-59745-251-9_3. Methods Mol Biol. 2009. PMID: 19378139

10

Parallelization of the MAFFT multiple sequence alignment program.

Katoh K, Toh H. Katoh K, et al. Bioinformatics. 2010 Aug 1;26(15):1899-900. doi: 10.1093/bioinformatics/btq224. Epub 2010 Apr 28. Bioinformatics. 2010. PMID: 20427515 Free PMC article.

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