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A cross-platform toolkit for mass spectrometry and proteomics.
Chambers MC, Maclean B, Burke R, Amodei D, Ruderman DL, Neumann S, Gatto L, Fischer B, Pratt B, Egertson J, Hoff K, Kessner D, Tasman N, Shulman N, Frewen B, Baker TA, Brusniak MY, Paulse C, Creasy D, Flashner L, Kani K, Moulding C, Seymour SL, Nuwaysir LM, Lefebvre B, Kuhlmann F, Roark J, Rainer P, Detlev S, Hemenway T, Huhmer A, Langridge J, Connolly B, Chadick T, Holly K, Eckels J, Deutsch EW, Moritz RL, Katz JE, Agus DB, MacCoss M, Tabb DL, Mallick P. Chambers MC, et al. Among authors: katz je. Nat Biotechnol. 2012 Oct;30(10):918-20. doi: 10.1038/nbt.2377. Nat Biotechnol. 2012. PMID: 23051804 Free PMC article.
A perspective on protein profiling of blood.
Katz JE, Mallick P, Agus DB. Katz JE, et al. BJU Int. 2005 Sep;96(4):477-82. doi: 10.1111/j.1464-410X.2005.05669.x. BJU Int. 2005. PMID: 16104895 Review. No abstract available.
Model-based discovery of circulating biomarkers.
Vogelsang MS, Kani K, Katz JE, Mallick P. Vogelsang MS, et al. Among authors: katz je. Methods Mol Biol. 2011;728:87-107. doi: 10.1007/978-1-61779-068-3_5. Methods Mol Biol. 2011. PMID: 21468942
Peptide identification from mixture tandem mass spectra.
Wang J, Pérez-Santiago J, Katz JE, Mallick P, Bandeira N. Wang J, et al. Among authors: katz je. Mol Cell Proteomics. 2010 Jul;9(7):1476-85. doi: 10.1074/mcp.M000136-MCP201. Epub 2010 Mar 27. Mol Cell Proteomics. 2010. PMID: 20348588 Free PMC article.
Installation and use of LabKey Server for proteomics.
Eckels J, Hussey P, Nelson EK, Myers T, Rauch A, Bellew M, Connolly B, Law W, Eng JK, Katz J, McIntosh M, Mallick P, Igra M. Eckels J, et al. Curr Protoc Bioinformatics. 2011 Dec;Chapter 13:13.5.1-13.5.25. doi: 10.1002/0471250953.bi1305s36. Curr Protoc Bioinformatics. 2011. PMID: 22161569
Quantitative proteomic profiling identifies protein correlates to EGFR kinase inhibition.
Kani K, Faca VM, Hughes LD, Zhang W, Fang Q, Shahbaba B, Luethy R, Erde J, Schmidt J, Pitteri SJ, Zhang Q, Katz JE, Gross ME, Plevritis SK, McIntosh MW, Jain A, Hanash S, Agus DB, Mallick P. Kani K, et al. Among authors: katz je. Mol Cancer Ther. 2012 May;11(5):1071-81. doi: 10.1158/1535-7163.MCT-11-0852. Epub 2012 Mar 12. Mol Cancer Ther. 2012. PMID: 22411897 Free PMC article.
67 results