Kavvas E - Search Results

1

Independent component analysis recovers consistent regulatory signals from disparate datasets.

Sastry AV, Hu A, Heckmann D, Poudel S, Kavvas E, Palsson BO. Sastry AV, et al. Among authors: kavvas e. PLoS Comput Biol. 2021 Feb 2;17(2):e1008647. doi: 10.1371/journal.pcbi.1008647. eCollection 2021 Feb. PLoS Comput Biol. 2021. PMID: 33529205 Free PMC article.

2

ssbio: a Python framework for structural systems biology.

Mih N, Brunk E, Chen K, Catoiu E, Sastry A, Kavvas E, Monk JM, Zhang Z, Palsson BO. Mih N, et al. Among authors: kavvas e. Bioinformatics. 2018 Jun 15;34(12):2155-2157. doi: 10.1093/bioinformatics/bty077. Bioinformatics. 2018. PMID: 29444205 Free PMC article.

3

Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa.

Fang X, Monk JM, Mih N, Du B, Sastry AV, Kavvas E, Seif Y, Smarr L, Palsson BO. Fang X, et al. Among authors: kavvas e. BMC Syst Biol. 2018 Jun 11;12(1):66. doi: 10.1186/s12918-018-0587-5. BMC Syst Biol. 2018. PMID: 29890970 Free PMC article.

4

Machine learning with random subspace ensembles identifies antimicrobial resistance determinants from pan-genomes of three pathogens.

Hyun JC, Kavvas ES, Monk JM, Palsson BO. Hyun JC, et al. Among authors: kavvas es. PLoS Comput Biol. 2020 Mar 2;16(3):e1007608. doi: 10.1371/journal.pcbi.1007608. eCollection 2020 Mar. PLoS Comput Biol. 2020. PMID: 32119670 Free PMC article.

5

Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions.

Kavvas ES, Seif Y, Yurkovich JT, Norsigian C, Poudel S, Greenwald WW, Ghatak S, Palsson BO, Monk JM. Kavvas ES, et al. BMC Syst Biol. 2018 Mar 2;12(1):25. doi: 10.1186/s12918-018-0557-y. BMC Syst Biol. 2018. PMID: 29499714 Free PMC article.

6

Experimental Evolution Reveals Unifying Systems-Level Adaptations but Diversity in Driving Genotypes.

Kavvas ES, Long CP, Sastry A, Poudel S, Antoniewicz MR, Ding Y, Mohamed ET, Szubin R, Monk JM, Feist AM, Palsson BO. Kavvas ES, et al. mSystems. 2022 Dec 20;7(6):e0016522. doi: 10.1128/msystems.00165-22. Epub 2022 Oct 13. mSystems. 2022. PMID: 36226969 Free PMC article.

7

Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance.

Kavvas ES, Catoiu E, Mih N, Yurkovich JT, Seif Y, Dillon N, Heckmann D, Anand A, Yang L, Nizet V, Monk JM, Palsson BO. Kavvas ES, et al. Nat Commun. 2018 Oct 17;9(1):4306. doi: 10.1038/s41467-018-06634-y. Nat Commun. 2018. PMID: 30333483 Free PMC article.

8

Systems Biology and Pangenome of Salmonella O-Antigens.

Seif Y, Monk JM, Machado H, Kavvas E, Palsson BO. Seif Y, et al. Among authors: kavvas e. mBio. 2019 Aug 27;10(4):e01247-19. doi: 10.1128/mBio.01247-19. mBio. 2019. PMID: 31455646 Free PMC article.

9

A biochemically-interpretable machine learning classifier for microbial GWAS.

Kavvas ES, Yang L, Monk JM, Heckmann D, Palsson BO. Kavvas ES, et al. Nat Commun. 2020 May 22;11(1):2580. doi: 10.1038/s41467-020-16310-9. Nat Commun. 2020. PMID: 32444610 Free PMC article.

10

iCN718, an Updated and Improved Genome-Scale Metabolic Network Reconstruction of Acinetobacter baumannii AYE.

Norsigian CJ, Kavvas E, Seif Y, Palsson BO, Monk JM. Norsigian CJ, et al. Among authors: kavvas e. Front Genet. 2018 Apr 10;9:121. doi: 10.3389/fgene.2018.00121. eCollection 2018. Front Genet. 2018. PMID: 29692801 Free PMC article.

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