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Bursts of retrotransposition reproduced in Arabidopsis.
Tsukahara S, Kobayashi A, Kawabe A, Mathieu O, Miura A, Kakutani T. Tsukahara S, et al. Among authors: kawabe a. Nature. 2009 Sep 17;461(7262):423-6. doi: 10.1038/nature08351. Epub 2009 Sep 6. Nature. 2009. PMID: 19734880
Retrotransposons, which proliferate by reverse transcription of RNA intermediates, comprise a major portion of plant genomes. ...Using multiple lines of self-pollinated ddm1 mutant, we detected an increase in copy number, and verified this for various retrotransposons in …
Retrotransposons, which proliferate by reverse transcription of RNA intermediates, comprise a major portion of plant genomes. ...Usin …
Characterization of duplicated two cytosolic phosphoglucose isomerase (PgiC) loci in Arabidopsis halleri ssp. gemmifera.
Kawabe A, Miyashita NT. Kawabe A, et al. Genes Genet Syst. 2002 Jun;77(3):159-65. doi: 10.1266/ggs.77.159. Genes Genet Syst. 2002. PMID: 12207037
Another locus (PgiC1) has common structure with A. thaliana and expressed normally. A phylogenetic tree of PgiC sequences revealed that duplication of the two loci in A. gemmifera occurred after species splitting of A. thaliana and A. gemmifera. …
Another locus (PgiC1) has common structure with A. thaliana and expressed normally. A phylogenetic tree of PgiC sequences reve …
Nucleotide polymorphism at the Atmyb2 locus of the wild plant Arabidopsis thaliana.
Kamiya T, Kawabe A, Miyashita NT. Kamiya T, et al. Among authors: kawabe a. Genet Res. 2002 Oct;80(2):89-98. doi: 10.1017/s0016672302005815. Genet Res. 2002. PMID: 12534212
Tajima's test and Fu and Li's test did not give a significant result. In contrast to the low level of polymorphism, the degree of divergence of the Atmyb2 region was higher between A. thaliana and A. gemmifera (K = 0.0730) than for other loci. ...Strong purif …
Tajima's test and Fu and Li's test did not give a significant result. In contrast to the low level of polymorphism, the degree of div …
DNA polymorphism at the ACAULIS5 locus of the wild plant Arabidopsis thaliana.
Yoshida K, Kamiya T, Kawabe A, Miyashita NT. Yoshida K, et al. Among authors: kawabe a. Genes Genet Syst. 2003 Feb;78(1):11-21. doi: 10.1266/ggs.78.11. Genes Genet Syst. 2003. PMID: 12655134
However, the HKA test indicated that the level of polymorphism in the intron was significantly high, compared with A. gemmifera. ...These results can be explained by elevated mutation rate in the ACL5 region in the A. thaliana lineage after the two species were spli …
However, the HKA test indicated that the level of polymorphism in the intron was significantly high, compared with A. gemmifera. ...T …
Interlocus nonrandom association of polymorphisms in Drosophila chemoreceptor genes.
Takano-Shimizu T, Kawabe A, Inomata N, Nanba N, Kondo R, Inoue Y, Itoh M. Takano-Shimizu T, et al. Among authors: kawabe a. Proc Natl Acad Sci U S A. 2004 Sep 28;101(39):14156-61. doi: 10.1073/pnas.0401782101. Epub 2004 Sep 17. Proc Natl Acad Sci U S A. 2004. PMID: 15377795 Free PMC article.
Some forms of multilocus selection with epistasis, such as truncation selection, can effectively reduce the mutation load [Kondrashov, A. ...Natural selection is suggested to play a significant role in shaping the pattern of LD observed in this study....
Some forms of multilocus selection with epistasis, such as truncation selection, can effectively reduce the mutation load [Kondrashov, A
Polymorphic chromosomal specificity of centromere satellite families in Arabidopsis halleri ssp. gemmifera.
Kawabe A, Nasuda S. Kawabe A, et al. Genetica. 2006 Mar;126(3):335-42. doi: 10.1007/s10709-005-0718-y. Genetica. 2006. PMID: 16636927
All five A. gemmifera strains have three chromosome pairs with 45S (5.8S-16S-26S) rDNA loci, and one pair with both 5S and 45S rDNA loci. ...A plant from Fumuro was heterozygous for the chromosome specificities of centromere satellite families, possibly due to a
All five A. gemmifera strains have three chromosome pairs with 45S (5.8S-16S-26S) rDNA loci, and one pair with both 5S and 45S rDNA l …
Chromosome-specific satellite sequences in Turritis glabra.
Kawabe A, Nasuda S. Kawabe A, et al. Genes Genet Syst. 2006 Aug;81(4):287-90. doi: 10.1266/ggs.81.287. Genes Genet Syst. 2006. PMID: 17038800
The relationships of satellite sequences reflected the species phylogeny, indicating that the replacement of satellite sequences has occurred in each species lineage independently, and shared variants could not have existed for a long time between species....
The relationships of satellite sequences reflected the species phylogeny, indicating that the replacement of satellite sequences has occurre …
Evolution and control of imprinted FWA genes in the genus Arabidopsis.
Fujimoto R, Kinoshita Y, Kawabe A, Kinoshita T, Takashima K, Nordborg M, Nasrallah ME, Shimizu KK, Kudoh H, Kakutani T. Fujimoto R, et al. Among authors: kawabe a. PLoS Genet. 2008 Apr 4;4(4):e1000048. doi: 10.1371/journal.pgen.1000048. PLoS Genet. 2008. PMID: 18389059 Free PMC article.
Tissue-specific and imprinted expression of FWA depends on DNA methylation in the FWA promoter, which is comprised of two direct repeats containing a sequence related to a SINE retroelement. ...Another related species, A. halleri, did not have a tandem …
Tissue-specific and imprinted expression of FWA depends on DNA methylation in the FWA promoter, which is comprised of two direct repeats con …
Centromere-targeted de novo integrations of an LTR retrotransposon of Arabidopsis lyrata.
Tsukahara S, Kawabe A, Kobayashi A, Ito T, Aizu T, Shin-i T, Toyoda A, Fujiyama A, Tarutani Y, Kakutani T. Tsukahara S, et al. Among authors: kawabe a. Genes Dev. 2012 Apr 1;26(7):705-13. doi: 10.1101/gad.183871.111. Epub 2012 Mar 19. Genes Dev. 2012. PMID: 22431508 Free PMC article.
The introduced Tal1 was retrotransposed in A. thaliana, and most of the retrotransposed copies were found in centromeric repeats of A. thaliana, suggesting targeted integration. The targeted integration is especially surprising because the centromeric repeat sequenc …
The introduced Tal1 was retrotransposed in A. thaliana, and most of the retrotransposed copies were found in centromeric repeats of …
Evolution of the ONSEN retrotransposon family activated upon heat stress in Brassicaceae.
Ito H, Yoshida T, Tsukahara S, Kawabe A. Ito H, et al. Among authors: kawabe a. Gene. 2013 Apr 15;518(2):256-61. doi: 10.1016/j.gene.2013.01.034. Epub 2013 Jan 29. Gene. 2013. PMID: 23370337
A Ty1/Copia-like retrotransposon, ONSEN, is activated by heat stress in Arabidopsis thaliana, and its de novo integrations that were observed preferentially within genes implies its regulation of neighboring genes. Here we show that ONSEN related copies were found in most
A Ty1/Copia-like retrotransposon, ONSEN, is activated by heat stress in Arabidopsis thaliana, and its de novo integrations that were
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