Kazemian M - Search Results

1

Improved accuracy of supervised CRM discovery with interpolated Markov models and cross-species comparison.

Kazemian M, Zhu Q, Halfon MS, Sinha S. Kazemian M, et al. Nucleic Acids Res. 2011 Dec;39(22):9463-72. doi: 10.1093/nar/gkr621. Epub 2011 Aug 5. Nucleic Acids Res. 2011. PMID: 21821659 Free PMC article.

2

Evidence for deep regulatory similarities in early developmental programs across highly diverged insects.

Kazemian M, Suryamohan K, Chen JY, Zhang Y, Samee MA, Halfon MS, Sinha S. Kazemian M, et al. Genome Biol Evol. 2014 Sep;6(9):2301-20. doi: 10.1093/gbe/evu184. Genome Biol Evol. 2014. PMID: 25173756 Free PMC article.

3

Widespread evidence of cooperative DNA binding by transcription factors in Drosophila development.

Kazemian M, Pham H, Wolfe SA, Brodsky MH, Sinha S. Kazemian M, et al. Nucleic Acids Res. 2013 Sep;41(17):8237-52. doi: 10.1093/nar/gkt598. Epub 2013 Jul 11. Nucleic Acids Res. 2013. PMID: 23847101 Free PMC article.

4

CRM Discovery Beyond Model Insects.

Kazemian M, Halfon MS. Kazemian M, et al. Methods Mol Biol. 2019;1858:117-139. doi: 10.1007/978-1-4939-8775-7_10. Methods Mol Biol. 2019. PMID: 30414115 Free PMC article.

5

Integrating motif, DNA accessibility and gene expression data to build regulatory maps in an organism.

Blatti C, Kazemian M, Wolfe S, Brodsky M, Sinha S. Blatti C, et al. Among authors: kazemian m. Nucleic Acids Res. 2015 Apr 30;43(8):3998-4012. doi: 10.1093/nar/gkv195. Epub 2015 Mar 19. Nucleic Acids Res. 2015. PMID: 25791631 Free PMC article.

6

Simulations of enhancer evolution provide mechanistic insights into gene regulation.

Duque T, Samee MA, Kazemian M, Pham HN, Brodsky MH, Sinha S. Duque T, et al. Among authors: kazemian m. Mol Biol Evol. 2014 Jan;31(1):184-200. doi: 10.1093/molbev/mst170. Epub 2013 Oct 4. Mol Biol Evol. 2014. PMID: 24097306 Free PMC article.

7

Computational identification of diverse mechanisms underlying transcription factor-DNA occupancy.

Cheng Q, Kazemian M, Pham H, Blatti C, Celniker SE, Wolfe SA, Brodsky MH, Sinha S. Cheng Q, et al. Among authors: kazemian m. PLoS Genet. 2013;9(8):e1003571. doi: 10.1371/journal.pgen.1003571. Epub 2013 Aug 1. PLoS Genet. 2013. PMID: 23935523 Free PMC article.

8

Genome Surveyor 2.0: cis-regulatory analysis in Drosophila.

Kazemian M, Brodsky MH, Sinha S. Kazemian M, et al. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W79-85. doi: 10.1093/nar/gkr291. Epub 2011 May 18. Nucleic Acids Res. 2011. PMID: 21593125 Free PMC article.

9

FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system.

Zhu LJ, Christensen RG, Kazemian M, Hull CJ, Enuameh MS, Basciotta MD, Brasefield JA, Zhu C, Asriyan Y, Lapointe DS, Sinha S, Wolfe SA, Brodsky MH. Zhu LJ, et al. Among authors: kazemian m. Nucleic Acids Res. 2011 Jan;39(Database issue):D111-7. doi: 10.1093/nar/gkq858. Epub 2010 Nov 19. Nucleic Acids Res. 2011. PMID: 21097781 Free PMC article.

10

Motif-blind, genome-wide discovery of cis-regulatory modules in Drosophila and mouse.

Kantorovitz MR, Kazemian M, Kinston S, Miranda-Saavedra D, Zhu Q, Robinson GE, Göttgens B, Halfon MS, Sinha S. Kantorovitz MR, et al. Among authors: kazemian m. Dev Cell. 2009 Oct;17(4):568-79. doi: 10.1016/j.devcel.2009.09.002. Dev Cell. 2009. PMID: 19853570 Free PMC article.

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