Kaznessis YN - Search Results

1

Optimization of a stochastically simulated gene network model via simulated annealing.

Tomshine J, Kaznessis YN. Tomshine J, et al. Among authors: kaznessis yn. Biophys J. 2006 Nov 1;91(9):3196-205. doi: 10.1529/biophysj.106.083485. Epub 2006 Aug 18. Biophys J. 2006. PMID: 16920827 Free PMC article.

2

Model-driven designs of an oscillating gene network.

Tuttle LM, Salis H, Tomshine J, Kaznessis YN. Tuttle LM, et al. Among authors: kaznessis yn. Biophys J. 2005 Dec;89(6):3873-83. doi: 10.1529/biophysj.105.064204. Epub 2005 Sep 23. Biophys J. 2005. PMID: 16183880 Free PMC article.

3

SynBioSS: the synthetic biology modeling suite.

Hill AD, Tomshine JR, Weeding EM, Sotiropoulos V, Kaznessis YN. Hill AD, et al. Among authors: kaznessis yn. Bioinformatics. 2008 Nov 1;24(21):2551-3. doi: 10.1093/bioinformatics/btn468. Epub 2008 Aug 30. Bioinformatics. 2008. PMID: 18757873

4

Multiscale Hy3S: hybrid stochastic simulation for supercomputers.

Salis H, Sotiropoulos V, Kaznessis YN. Salis H, et al. Among authors: kaznessis yn. BMC Bioinformatics. 2006 Feb 24;7:93. doi: 10.1186/1471-2105-7-93. BMC Bioinformatics. 2006. PMID: 16504125 Free PMC article.

5

Stochastic model reduction using a modified Hill-type kinetic rate law.

Smadbeck P, Kaznessis Y. Smadbeck P, et al. J Chem Phys. 2012 Dec 21;137(23):234109. doi: 10.1063/1.4770273. J Chem Phys. 2012. PMID: 23267473 Free PMC article.

6

Computer-aided design of modular protein devices: Boolean AND gene activation.

Salis H, Kaznessis YN. Salis H, et al. Among authors: kaznessis yn. Phys Biol. 2006 Dec 22;3(4):295-310. doi: 10.1088/1478-3975/3/4/007. Phys Biol. 2006. PMID: 17200605

7

An equation-free probabilistic steady-state approximation: dynamic application to the stochastic simulation of biochemical reaction networks.

Salis H, Kaznessis YN. Salis H, et al. Among authors: kaznessis yn. J Chem Phys. 2005 Dec 1;123(21):214106. doi: 10.1063/1.2131050. J Chem Phys. 2005. PMID: 16356038

8

Accurate hybrid stochastic simulation of a system of coupled chemical or biochemical reactions.

Salis H, Kaznessis Y. Salis H, et al. J Chem Phys. 2005 Feb 1;122(5):54103. doi: 10.1063/1.1835951. J Chem Phys. 2005. PMID: 15740306

9

Simulations of zwitterionic and anionic phospholipid monolayers.

Kaznessis YN, Kim S, Larson RG. Kaznessis YN, et al. Biophys J. 2002 Apr;82(4):1731-42. doi: 10.1016/S0006-3495(02)75525-2. Biophys J. 2002. PMID: 11916834 Free PMC article.

10

Stochastic simulations of the tetracycline operon.

Biliouris K, Daoutidis P, Kaznessis YN. Biliouris K, et al. Among authors: kaznessis yn. BMC Syst Biol. 2011 Jan 19;5:9. doi: 10.1186/1752-0509-5-9. BMC Syst Biol. 2011. PMID: 21247421 Free PMC article.

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