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131 results
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Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies.
Alamanova D, Stegmaier P, Kel A. Alamanova D, et al. Among authors: kel a. BMC Bioinformatics. 2010 May 3;11:225. doi: 10.1186/1471-2105-11-225. BMC Bioinformatics. 2010. PMID: 20438625 Free PMC article.
Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information.
Masseroli M, Mons B, Bongcam-Rudloff E, Ceri S, Kel A, Rechenmann F, Lisacek F, Romano P. Masseroli M, et al. Among authors: kel a. BMC Bioinformatics. 2014;15 Suppl 1(Suppl 1):S2. doi: 10.1186/1471-2105-15-S1-S2. Epub 2014 Jan 10. BMC Bioinformatics. 2014. PMID: 24564249 Free PMC article. Review.
Integrative content-driven concepts for bioinformatics "beyond the cell".
Wingender E, Crass T, Hogan JD, Kel AE, Kel-Margoulis OV, Potapov AP. Wingender E, et al. J Biosci. 2007 Jan;32(1):169-80. doi: 10.1007/s12038-007-0015-2. J Biosci. 2007. PMID: 17426389
Molecular mechanistic associations of human diseases.
Stegmaier P, Krull M, Voss N, Kel AE, Wingender E. Stegmaier P, et al. BMC Syst Biol. 2010 Sep 6;4:124. doi: 10.1186/1752-0509-4-124. BMC Syst Biol. 2010. PMID: 20815942 Free PMC article.
Genome wide prediction of HNF4alpha functional binding sites by the use of local and global sequence context.
Kel AE, Niehof M, Matys V, Zemlin R, Borlak J. Kel AE, et al. Genome Biol. 2008;9(2):R36. doi: 10.1186/gb-2008-9-2-r36. Epub 2008 Feb 21. Genome Biol. 2008. PMID: 18291023 Free PMC article.
Search for Master Regulators in Walking Cancer Pathways.
Kel AE. Kel AE. Methods Mol Biol. 2017;1613:161-191. doi: 10.1007/978-1-4939-7027-8_8. Methods Mol Biol. 2017. PMID: 28849562
Systematic DNA-binding domain classification of transcription factors.
Stegmaier P, Kel AE, Wingender E. Stegmaier P, et al. Genome Inform. 2004;15(2):276-86. Genome Inform. 2004. PMID: 15706513
Composition-sensitive analysis of the human genome for regulatory signals.
Kel-Margoulis OV, Tchekmenev D, Kel AE, Goessling E, Hornischer K, Lewicki-Potapov B, Wingender E. Kel-Margoulis OV, et al. In Silico Biol. 2003;3(1-2):145-71. Epub 2003 Jun 27. In Silico Biol. 2003. PMID: 12954097
TRANSCompel: a database on composite regulatory elements in eukaryotic genes.
Kel-Margoulis OV, Kel AE, Reuter I, Deineko IV, Wingender E. Kel-Margoulis OV, et al. Nucleic Acids Res. 2002 Jan 1;30(1):332-4. doi: 10.1093/nar/30.1.332. Nucleic Acids Res. 2002. PMID: 11752329 Free PMC article.
Recognition of cis-regulatory elements with vombat.
Posch S, Grau J, Gohr A, Ben-Gal I, Kel AE, Grosse I. Posch S, et al. Among authors: kel ae. J Bioinform Comput Biol. 2007 Apr;5(2B):561-77. doi: 10.1142/s0219720007002886. J Bioinform Comput Biol. 2007. PMID: 17636862
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