Kelk SM - Search Results

1

Ancient dispersal of the human fungal pathogen Cryptococcus gattii from the Amazon rainforest.

Hagen F, Ceresini PC, Polacheck I, Ma H, van Nieuwerburgh F, Gabaldón T, Kagan S, Pursall ER, Hoogveld HL, van Iersel LJ, Klau GW, Kelk SM, Stougie L, Bartlett KH, Voelz K, Pryszcz LP, Castañeda E, Lazera M, Meyer W, Deforce D, Meis JF, May RC, Klaassen CH, Boekhout T. Hagen F, et al. Among authors: kelk sm. PLoS One. 2013 Aug 7;8(8):e71148. doi: 10.1371/journal.pone.0071148. Print 2013. PLoS One. 2013. PMID: 23940707 Free PMC article.

2

Constructing level-2 phylogenetic networks from triplets.

van Iersel L, Keijsper J, Kelk S, Stougie L, Hagen F, Boekhout T. van Iersel L, et al. IEEE/ACM Trans Comput Biol Bioinform. 2009 Oct-Dec;6(4):667-81. doi: 10.1109/TCBB.2009.22. IEEE/ACM Trans Comput Biol Bioinform. 2009. PMID: 19875864

3

Optimal flux spaces of genome-scale stoichiometric models are determined by a few subnetworks.

Kelk SM, Olivier BG, Stougie L, Bruggeman FJ. Kelk SM, et al. Sci Rep. 2012;2:580. doi: 10.1038/srep00580. Epub 2012 Aug 15. Sci Rep. 2012. PMID: 22896812 Free PMC article.

4

Shorelines of islands of tractability: algorithms for parsimony and minimum perfect phylogeny haplotyping problems.

van Iersel L, Keijsper J, Kelk S, Stougie L. van Iersel L, et al. IEEE/ACM Trans Comput Biol Bioinform. 2008 Apr-Jun;5(2):301-12. doi: 10.1109/TCBB.2007.70232. IEEE/ACM Trans Comput Biol Bioinform. 2008. PMID: 18451439

5

Applicability of several rooted phylogenetic network algorithms for representing the evolutionary history of SARS-CoV-2.

Wallin R, van Iersel L, Kelk S, Stougie L. Wallin R, et al. BMC Ecol Evol. 2021 Dec 7;21(1):220. doi: 10.1186/s12862-021-01946-y. BMC Ecol Evol. 2021. PMID: 34876022 Free PMC article.

6

Some mathematical refinements concerning error minimization in the genetic code.

Buhrman H, van der Gulik PT, Kelk SM, Koolen WM, Stougie L. Buhrman H, et al. Among authors: kelk sm. IEEE/ACM Trans Comput Biol Bioinform. 2011 Sep-Oct;8(5):1358-72. doi: 10.1109/TCBB.2011.40. IEEE/ACM Trans Comput Biol Bioinform. 2011. PMID: 21358008

7

On Unrooted and Root-Uncertain Variants of Several Well-Known Phylogenetic Network Problems.

van Iersel L, Kelk S, Stamoulis G, Stougie L, Boes O. van Iersel L, et al. Algorithmica. 2018;80(11):2993-3022. doi: 10.1007/s00453-017-0366-5. Epub 2017 Aug 22. Algorithmica. 2018. PMID: 30956378 Free PMC article.

8

Networks: expanding evolutionary thinking.

Bapteste E, van Iersel L, Janke A, Kelchner S, Kelk S, McInerney JO, Morrison DA, Nakhleh L, Steel M, Stougie L, Whitfield J. Bapteste E, et al. Trends Genet. 2013 Aug;29(8):439-41. doi: 10.1016/j.tig.2013.05.007. Epub 2013 Jun 11. Trends Genet. 2013. PMID: 23764187

9

Do Branch Lengths Help to Locate a Tree in a Phylogenetic Network?

Gambette P, van Iersel L, Kelk S, Pardi F, Scornavacca C. Gambette P, et al. Bull Math Biol. 2016 Sep;78(9):1773-1795. doi: 10.1007/s11538-016-0199-4. Epub 2016 Sep 22. Bull Math Biol. 2016. PMID: 27659024

10

Phylogenetic networks do not need to be complex: using fewer reticulations to represent conflicting clusters.

van Iersel L, Kelk S, Rupp R, Huson D. van Iersel L, et al. Bioinformatics. 2010 Jun 15;26(12):i124-31. doi: 10.1093/bioinformatics/btq202. Bioinformatics. 2010. PMID: 20529896 Free PMC article.

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