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Sequencing and comparison of yeast species to identify genes and regulatory elements.
Kellis M, Patterson N, Endrizzi M, Birren B, Lander ES. Kellis M, et al. Nature. 2003 May 15;423(6937):241-54. doi: 10.1038/nature01644. Nature. 2003. PMID: 12748633
Phylogenetically and spatially conserved word pairs associated with gene-expression changes in yeasts.
Chiang DY, Moses AM, Kellis M, Lander ES, Eisen MB. Chiang DY, et al. Among authors: kellis m. Genome Biol. 2003;4(7):R43. doi: 10.1186/gb-2003-4-7-r43. Epub 2003 Jun 26. Genome Biol. 2003. PMID: 12844359 Free PMC article.
Position specific variation in the rate of evolution in transcription factor binding sites.
Moses AM, Chiang DY, Kellis M, Lander ES, Eisen MB. Moses AM, et al. Among authors: kellis m. BMC Evol Biol. 2003 Aug 28;3:19. doi: 10.1186/1471-2148-3-19. Epub 2003 Aug 28. BMC Evol Biol. 2003. PMID: 12946282 Free PMC article.
Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae.
Kellis M, Birren BW, Lander ES. Kellis M, et al. Nature. 2004 Apr 8;428(6983):617-24. doi: 10.1038/nature02424. Epub 2004 Mar 7. Nature. 2004. PMID: 15004568
The changing face of genomics.
Kellis M. Kellis M. Genome Biol. 2004;5(5):324. doi: 10.1186/gb-2004-5-5-324. Epub 2004 Apr 30. Genome Biol. 2004. PMID: 15128443 Free PMC article.
Methods in comparative genomics: genome correspondence, gene identification and regulatory motif discovery.
Kellis M, Patterson N, Birren B, Berger B, Lander ES. Kellis M, et al. J Comput Biol. 2004;11(2-3):319-55. doi: 10.1089/1066527041410319. J Comput Biol. 2004. PMID: 15285895
In Kellis et al. (2003), we reported the genome sequences of S. paradoxus, S. mikatae, and S. bayanus and compared these three yeast species to their close relative, S. cerevisiae. ...
In Kellis et al. (2003), we reported the genome sequences of S. paradoxus, S. mikatae, and S. bayanus and compared these three yeast …
Transcriptional regulatory code of a eukaryotic genome.
Harbison CT, Gordon DB, Lee TI, Rinaldi NJ, Macisaac KD, Danford TW, Hannett NM, Tagne JB, Reynolds DB, Yoo J, Jennings EG, Zeitlinger J, Pokholok DK, Kellis M, Rolfe PA, Takusagawa KT, Lander ES, Gifford DK, Fraenkel E, Young RA. Harbison CT, et al. Among authors: kellis m. Nature. 2004 Sep 2;431(7004):99-104. doi: 10.1038/nature02800. Nature. 2004. PMID: 15343339 Free PMC article.
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype.
Jaillon O, Aury JM, Brunet F, Petit JL, Stange-Thomann N, Mauceli E, Bouneau L, Fischer C, Ozouf-Costaz C, Bernot A, Nicaud S, Jaffe D, Fisher S, Lutfalla G, Dossat C, Segurens B, Dasilva C, Salanoubat M, Levy M, Boudet N, Castellano S, Anthouard V, Jubin C, Castelli V, Katinka M, Vacherie B, Biémont C, Skalli Z, Cattolico L, Poulain J, De Berardinis V, Cruaud C, Duprat S, Brottier P, Coutanceau JP, Gouzy J, Parra G, Lardier G, Chapple C, McKernan KJ, McEwan P, Bosak S, Kellis M, Volff JN, Guigó R, Zody MC, Mesirov J, Lindblad-Toh K, Birren B, Nusbaum C, Kahn D, Robinson-Rechavi M, Laudet V, Schachter V, Quétier F, Saurin W, Scarpelli C, Wincker P, Lander ES, Weissenbach J, Roest Crollius H. Jaillon O, et al. Among authors: kellis m. Nature. 2004 Oct 21;431(7011):946-57. doi: 10.1038/nature03025. Nature. 2004. PMID: 15496914
Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals.
Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M. Xie X, et al. Among authors: kellis m. Nature. 2005 Mar 17;434(7031):338-45. doi: 10.1038/nature03441. Epub 2005 Feb 27. Nature. 2005. PMID: 15735639 Free PMC article.
Large-scale discovery and validation of functional elements in the human genome.
Bernstein BE, Kellis M. Bernstein BE, et al. Among authors: kellis m. Genome Biol. 2005;6(3):312. doi: 10.1186/gb-2005-6-3-312. Epub 2005 Mar 1. Genome Biol. 2005. PMID: 15774039 Free PMC article.
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