Kemena C - Search Results

1

Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures.

Taly JF, Magis C, Bussotti G, Chang JM, Di Tommaso P, Erb I, Espinosa-Carrasco J, Kemena C, Notredame C. Taly JF, et al. Among authors: kemena c. Nat Protoc. 2011 Nov;6(11):1669-82. doi: 10.1038/nprot.2011.393. Nat Protoc. 2011. PMID: 21979275

2

Upcoming challenges for multiple sequence alignment methods in the high-throughput era.

Kemena C, Notredame C. Kemena C, et al. Bioinformatics. 2009 Oct 1;25(19):2455-65. doi: 10.1093/bioinformatics/btp452. Epub 2009 Jul 30. Bioinformatics. 2009. PMID: 19648142 Free PMC article. Review.

3

STRIKE: evaluation of protein MSAs using a single 3D structure.

Kemena C, Taly JF, Kleinjung J, Notredame C. Kemena C, et al. Bioinformatics. 2011 Dec 15;27(24):3385-91. doi: 10.1093/bioinformatics/btr587. Epub 2011 Oct 28. Bioinformatics. 2011. PMID: 22039207 Free PMC article.

4

Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package.

Kemena C, Bussotti G, Capriotti E, Marti-Renom MA, Notredame C. Kemena C, et al. Bioinformatics. 2013 May 1;29(9):1112-9. doi: 10.1093/bioinformatics/btt096. Epub 2013 Feb 28. Bioinformatics. 2013. PMID: 23449094

5

SARA-Coffee web server, a tool for the computation of RNA sequence and structure multiple alignments.

Di Tommaso P, Bussotti G, Kemena C, Capriotti E, Chatzou M, Prieto P, Notredame C. Di Tommaso P, et al. Among authors: kemena c. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W356-60. doi: 10.1093/nar/gku459. Epub 2014 Jun 27. Nucleic Acids Res. 2014. PMID: 24972831 Free PMC article.

6

Epistasis as the primary factor in molecular evolution.

Breen MS, Kemena C, Vlasov PK, Notredame C, Kondrashov FA. Breen MS, et al. Among authors: kemena c. Nature. 2012 Oct 25;490(7421):535-8. doi: 10.1038/nature11510. Epub 2012 Oct 14. Nature. 2012. PMID: 23064225

7

Multiple sequence alignment modeling: methods and applications.

Chatzou M, Magis C, Chang JM, Kemena C, Bussotti G, Erb I, Notredame C. Chatzou M, et al. Among authors: kemena c. Brief Bioinform. 2016 Nov;17(6):1009-1023. doi: 10.1093/bib/bbv099. Epub 2015 Nov 27. Brief Bioinform. 2016. PMID: 26615024 Review.

8

Alignathon: a competitive assessment of whole-genome alignment methods.

Earl D, Nguyen N, Hickey G, Harris RS, Fitzgerald S, Beal K, Seledtsov I, Molodtsov V, Raney BJ, Clawson H, Kim J, Kemena C, Chang JM, Erb I, Poliakov A, Hou M, Herrero J, Kent WJ, Solovyev V, Darling AE, Ma J, Notredame C, Brudno M, Dubchak I, Haussler D, Paten B. Earl D, et al. Among authors: kemena c. Genome Res. 2014 Dec;24(12):2077-89. doi: 10.1101/gr.174920.114. Epub 2014 Oct 1. Genome Res. 2014. PMID: 25273068 Free PMC article.

9

MDAT- Aligning multiple domain arrangements.

Kemena C, Bitard-Feildel T, Bornberg-Bauer E. Kemena C, et al. BMC Bioinformatics. 2015 Jan 28;16(1):19. doi: 10.1186/s12859-014-0442-7. BMC Bioinformatics. 2015. PMID: 25626688 Free PMC article.

10

DOGMA: a web server for proteome and transcriptome quality assessment.

Kemena C, Dohmen E, Bornberg-Bauer E. Kemena C, et al. Nucleic Acids Res. 2019 Jul 2;47(W1):W507-W510. doi: 10.1093/nar/gkz366. Nucleic Acids Res. 2019. PMID: 31076763 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

19 results

Search Page