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ARED 2.0: an update of AU-rich element mRNA database.
Bakheet T, Williams BR, Khabar KS. Bakheet T, et al. Among authors: khabar ks. Nucleic Acids Res. 2003 Jan 1;31(1):421-3. doi: 10.1093/nar/gkg023. Nucleic Acids Res. 2003. PMID: 12520039 Free PMC article.
ARED: human AU-rich element-containing mRNA database reveals an unexpectedly diverse functional repertoire of encoded proteins.
Bakheet T, Frevel M, Williams BR, Greer W, Khabar KS. Bakheet T, et al. Among authors: khabar ks. Nucleic Acids Res. 2001 Jan 1;29(1):246-54. doi: 10.1093/nar/29.1.246. Nucleic Acids Res. 2001. PMID: 11125104 Free PMC article.
An integrated computational and laboratory approach for selective amplification of mRNAs containing the adenylate uridylate-rich element consensus sequence.
Khabar KS, Dhalla M, Bakheet T, Sy C, al-Haj L. Khabar KS, et al. Genome Res. 2002 Jun;12(6):985-95. doi: 10.1101/gr.204902. Genome Res. 2002. PMID: 12045152 Free PMC article.
Heterogeneity in control of mRNA stability by AU-rich elements.
Tebo J, Der S, Frevel M, Khabar KS, Williams BR, Hamilton TA. Tebo J, et al. Among authors: khabar ks. J Biol Chem. 2003 Apr 4;278(14):12085-93. doi: 10.1074/jbc.M212992200. Epub 2003 Jan 28. J Biol Chem. 2003. PMID: 12556523
Selection of AU-rich transiently expressed sequences: reversal of cDNA abundance.
Khabar KS, Dhalla M, Al-Haj L, Bakheet T, Sy C, Naemmuddin M. Khabar KS, et al. RNA. 2004 Apr;10(4):747-53. doi: 10.1261/rna.5121704. RNA. 2004. PMID: 15037783 Free PMC article.
Assessment of reliability of microarray data and estimation of signal thresholds using mixture modeling.
Asyali MH, Shoukri MM, Demirkaya O, Khabar KS. Asyali MH, et al. Among authors: khabar ks. Nucleic Acids Res. 2004 Apr 27;32(8):2323-35. doi: 10.1093/nar/gkh544. Print 2004. Nucleic Acids Res. 2004. PMID: 15113873 Free PMC article.
AU-rich transient response transcripts in the human genome: expressed sequence tag clustering and gene discovery approach.
Khabar KS, Bakheet T, Williams BR. Khabar KS, et al. Genomics. 2005 Feb;85(2):165-75. doi: 10.1016/j.ygeno.2004.10.004. Genomics. 2005. PMID: 15676275
The AU-rich transcriptome: more than interferons and cytokines, and its role in disease.
Khabar KS. Khabar KS. J Interferon Cytokine Res. 2005 Jan;25(1):1-10. doi: 10.1089/jir.2005.25.1. J Interferon Cytokine Res. 2005. PMID: 15684617 Review.
ARED 3.0: the large and diverse AU-rich transcriptome.
Bakheet T, Williams BR, Khabar KS. Bakheet T, et al. Among authors: khabar ks. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D111-4. doi: 10.1093/nar/gkj052. Nucleic Acids Res. 2006. PMID: 16381826 Free PMC article.
Bioinformatics and experimental derivation of an efficient hybrid 3' untranslated region and use in expression active linear DNA with minimum poly(A) region.
Al-Zoghaibi F, Ashour T, Al-Ahmadi W, Abulleef H, Demirkaya O, Khabar KS. Al-Zoghaibi F, et al. Among authors: khabar ks. Gene. 2007 Apr 15;391(1-2):130-9. doi: 10.1016/j.gene.2006.12.013. Epub 2006 Dec 30. Gene. 2007. PMID: 17258873
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